Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GSF71_RS05525 Genome accession   NZ_CP048116
Coordinates   1110139..1110945 (+) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105139..1115945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS05505 yycF 1105336..1106049 (+) 714 WP_011373790.1 response regulator YycF -
  GSF71_RS05510 walK 1106059..1107957 (+) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  GSF71_RS05515 - 1107947..1109278 (+) 1332 WP_162100905.1 YycH family regulatory protein -
  GSF71_RS05520 - 1109283..1110104 (+) 822 WP_035147596.1 two-component system regulatory protein YycI -
  GSF71_RS05525 vicX 1110139..1110945 (+) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  GSF71_RS05530 htrA 1111079..1112338 (+) 1260 WP_025016471.1 S1C family serine protease Regulator
  GSF71_RS05535 rlmH 1112883..1113362 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GSF71_RS05540 - 1113502..1114161 (+) 660 WP_025016470.1 hypothetical protein -
  GSF71_RS05545 add 1114218..1115243 (-) 1026 WP_035147601.1 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=367263 GSF71_RS05525 WP_016264363.1 1110139..1110945(+) (vicX) [Latilactobacillus sakei strain MBEL1397]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=367263 GSF71_RS05525 WP_016264363.1 1110139..1110945(+) (vicX) [Latilactobacillus sakei strain MBEL1397]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575

Multiple sequence alignment