Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GSF71_RS04955 Genome accession   NZ_CP048116
Coordinates   991257..993005 (-) Length   582 a.a.
NCBI ID   WP_011375527.1    Uniprot ID   Q38UI2
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 986257..998005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS04935 - 987365..988834 (+) 1470 WP_162100898.1 ABC transporter permease -
  GSF71_RS04940 - 988850..989512 (+) 663 WP_035146852.1 ABC transporter ATP-binding protein -
  GSF71_RS04945 - 989606..990094 (+) 489 WP_052039264.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  GSF71_RS04950 - 990142..990795 (-) 654 WP_162100899.1 MIP/aquaporin family protein -
  GSF71_RS04955 recQ 991257..993005 (-) 1749 WP_011375527.1 DNA helicase RecQ Machinery gene
  GSF71_RS04960 - 993118..993678 (-) 561 WP_011375528.1 TMEM175 family protein -
  GSF71_RS04965 - 993790..994125 (+) 336 WP_143455232.1 hypothetical protein -
  GSF71_RS04970 - 994567..995079 (+) 513 WP_011375531.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  GSF71_RS04975 - 995195..995578 (+) 384 WP_011375532.1 YxeA family protein -
  GSF71_RS04980 - 995623..996162 (-) 540 WP_011375533.1 cysteine hydrolase family protein -
  GSF71_RS04985 - 996276..996674 (+) 399 WP_011375534.1 Lrp/AsnC family transcriptional regulator -
  GSF71_RS04990 - 996703..997341 (-) 639 WP_338016785.1 DNA alkylation repair protein -
  GSF71_RS04995 - 997354..997965 (-) 612 WP_076645101.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65752.38 Da        Isoelectric Point: 5.1646

>NTDB_id=367258 GSF71_RS04955 WP_011375527.1 991257..993005(-) (recQ) [Latilactobacillus sakei strain MBEL1397]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=367258 GSF71_RS04955 WP_011375527.1 991257..993005(-) (recQ) [Latilactobacillus sakei strain MBEL1397]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAATAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTCAA
ATTGCTTTATGTGTCGCCAGAACGGTTGGATTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTCGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGACCTAGTTATCTACGCTTGACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACATCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTTAAGACTGGTTTTTCACGGGAAAACCTGGCCTTTCAAGTGGTTAAAAATCAAAACAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATTGAAAAAGCGAAACTGGCAGTCACGATGTATCATGGTGGTTTAAATGAAATGGTGCGTCGGCAAAA
CCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCCGGACGTGATGGC
TTACCGAGTGAGGCCATCTTACTTTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTCGATACACGCGAATCACAAGAC
ATTACAATTGATGTTCAAAAGGTTTTATCGTGCATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTTGCACAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTATTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAAGTGTCGCGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGACAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCGC
CGTTTGTAATCTTCTCAGACAAGACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

DEAD/DEAH box helicase (DEAD)

(19-180)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38UI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521

Multiple sequence alignment