Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GSF71_RS01405 Genome accession   NZ_CP048116
Coordinates   290730..292460 (-) Length   576 a.a.
NCBI ID   WP_011374848.1    Uniprot ID   Q38WI2
Organism   Latilactobacillus sakei strain MBEL1397     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 285730..297460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS01385 - 285951..286595 (-) 645 WP_162100808.1 HD domain-containing protein -
  GSF71_RS01390 manA 286669..287643 (-) 975 WP_162100809.1 mannose-6-phosphate isomerase, class I -
  GSF71_RS01395 - 287745..288755 (-) 1011 WP_162100810.1 serine hydrolase domain-containing protein -
  GSF71_RS01400 rcrQ 288853..290730 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01405 rcrP 290730..292460 (-) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01410 - 292484..293125 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  GSF71_RS01415 - 293330..294058 (+) 729 WP_011374850.1 ion transporter -
  GSF71_RS01420 - 294256..294456 (-) 201 WP_004270328.1 cold-shock protein -
  GSF71_RS01425 - 294658..295314 (+) 657 WP_162100811.1 type II CAAX endopeptidase family protein -
  GSF71_RS01430 - 295335..295655 (+) 321 WP_016265278.1 hypothetical protein -
  GSF71_RS01435 - 295648..295830 (+) 183 WP_016265279.1 hypothetical protein -
  GSF71_RS01440 - 295827..296522 (-) 696 WP_162100812.1 YoaK family protein -
  GSF71_RS01445 mgsA 296606..297028 (-) 423 WP_011374855.1 methylglyoxal synthase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63754.90 Da        Isoelectric Point: 6.4076

>NTDB_id=367234 GSF71_RS01405 WP_011374848.1 290730..292460(-) (rcrP) [Latilactobacillus sakei strain MBEL1397]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=367234 GSF71_RS01405 WP_011374848.1 290730..292460(-) (rcrP) [Latilactobacillus sakei strain MBEL1397]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATACAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGAGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGCTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCCGCTAAGACATCA
CAAGGTCTGGGGCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAGGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTACCACTTTTCAAGGCAATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACGGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTAGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGCTTTACAGATCAAACTGTCAGCTTGGCCTTTGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGTCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTTTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTCTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415

Multiple sequence alignment