Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FDP16_RS07980 Genome accession   NZ_CP040798
Coordinates   1603921..1605723 (-) Length   600 a.a.
NCBI ID   WP_176799248.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598921..1610723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS07965 (FDP16_08290) - 1601394..1601975 (-) 582 WP_176799797.1 LURP-one-related/scramblase family protein -
  FDP16_RS07970 (FDP16_08295) prsA 1602116..1603123 (-) 1008 WP_176799246.1 peptidylprolyl isomerase PrsA -
  FDP16_RS07975 (FDP16_08300) - 1603236..1603919 (-) 684 WP_176799247.1 O-methyltransferase -
  FDP16_RS07980 (FDP16_08305) pepF 1603921..1605723 (-) 1803 WP_176799248.1 oligoendopeptidase F Regulator
  FDP16_RS07985 (FDP16_08310) coiA 1605760..1606704 (-) 945 WP_176799249.1 competence protein CoiA Machinery gene
  FDP16_RS07990 (FDP16_08315) celB 1606804..1608153 (-) 1350 WP_176799250.1 PTS cellobiose transporter subunit IIC -
  FDP16_RS07995 (FDP16_08320) - 1608197..1608700 (-) 504 WP_176799251.1 hypothetical protein -
  FDP16_RS08000 (FDP16_08325) - 1608710..1609036 (-) 327 WP_125330545.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69145.26 Da        Isoelectric Point: 4.5742

>NTDB_id=367228 FDP16_RS07980 WP_176799248.1 1603921..1605723(-) (pepF) [Streptococcus sanguinis strain CGMH058]
MAKQRNEIEEKYTWDLSTIFPTDEAFEAELAQVSEEVKKAASLAGHLLDSAESLLTTTEVQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSDFGQSFAFYEPEFMAITEEQYQAFLAEQPVLQLYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVHDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREA
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKSDQEGQVLTSEF
LNELYADLNEKYYGMKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=367228 FDP16_RS07980 WP_176799248.1 1603921..1605723(-) (pepF) [Streptococcus sanguinis strain CGMH058]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGAGCACCATTTTCCCAACAGATGAAGCCTTTGA
AGCGGAGTTGGCGCAGGTTTCGGAAGAAGTGAAGAAAGCAGCTAGTCTGGCTGGGCATTTGCTGGACTCAGCAGAAAGTC
TCTTAACAACGACTGAAGTGCAACTGGACTTGATGCGTCGTATTGAAAAGCTTTATTCTTATGCTCATATGAAGAATGAC
CAGGATACACGTGTGGCTAAGTATCAAGAGTATCAGGCTAAAGGCATGACTCTTTACAGCGATTTTGGTCAAAGCTTTGC
TTTCTATGAGCCCGAATTTATGGCGATTACAGAAGAACAGTACCAAGCTTTCTTGGCTGAGCAGCCAGTTTTGCAGCTGT
ATCAGCATTATTTTGATAAGCTTTTGAAAAAGAAAGCTCACATTCTGACACAGCGTGAAGAGGAGCTACTGGCTGGTGCT
GGTGAAATCTTCGGTGCAGCGGGCGAAACTTTTGCTATCTTGGATAATGCAGATATCGTCTTTCCGATGGTGCATGACGA
AGATGGAAATGAAGTTCAGCTTAGCCACGGTAACTATATCACCTTGGTTGAGTCTAAGAACCGAGAGGTCCGTAAGGAAG
CTTACGAGGCTCTCTACAGCGTCTACGAGCAGTATCAGCATACCTATGCTAAGACTTTGCAGACCAATGTCAAGGTTCAC
AATTACAATGCGAAAGTCCGCAAGTTTTCATCTGCCCGTGAAGCGGCTTTGTCAGCGGACTTTATTCCAGAAAGTGTCTA
TGACAGCTTAGTTTCAGCTGTCAATAAGCATTTGCCTCTCTTGCAGCGTTATATCGCTTTGCGAGCGAAGATTTTAGGCA
TTTCTGATTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTTCTGGCTATTCTAGGTGAGGATTATTTGAGCCGAGTCAAGACAGCTTTTTCAGAGCGTTGGATTGA
TGTTCATGAGAATCAAGGCAAGCGTTCAGGAGCATACTCAGGCGGTTCTTACGATACCAACGCCTTTATGTTGCTCAACT
GGCAGGATACACTGGACAATCTCTTTACCTTGGTGCACGAGACGGGTCACAGTATGCACTCAAGTTATACTCGTGAGGCG
CAGCCTTATGTTTACGGAGACTACTCTATCTTCTTGGCTGAGATTGCTTCAACGACCAATGAAAACATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGACGCCACTCGCTTTGCTATCCTCAATCACTTCTTAGATGGCTTTAGAGGTACGGTCT
TCCGTCAAACCCAGTTCGCAGAGTTTGAGCATGCTATCCACAAGTCTGACCAGGAAGGTCAAGTTTTGACCAGCGAGTTT
CTCAATGAACTCTACGCTGATTTGAACGAGAAATACTATGGAATGAAGAAAGAAGATAATCCACAGATTCAGTATGAGTG
GGCTCGGATTCCGCATTTCTACTATGATTACTATGTTTTCCAATATTCGACAGGATTTGCAGCCGCTTCGGCCTTGGCTG
AAAAGATTGTCCATGGTAGCCAAGAAGATAAGGATAAGTATCTGAACTATCTGAAAGCTGGGAACTCTGACTATCCACTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTACCTAAATGCTGCTTTTGCTGTCTTTGAGCGTCGTCT
GGATGAATTCGAAGCCTTGGTAGAAAAGTTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68

Multiple sequence alignment