Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FDP16_RS02320 Genome accession   NZ_CP040798
Coordinates   457755..458486 (+) Length   243 a.a.
NCBI ID   WP_176798427.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 452755..463486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS02290 (FDP16_02385) - 453096..454517 (+) 1422 WP_176798421.1 NCS2 family permease -
  FDP16_RS02295 (FDP16_02390) tsaE 454657..455097 (+) 441 WP_176798422.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FDP16_RS02300 (FDP16_02395) - 455090..455611 (+) 522 WP_176798423.1 GNAT family N-acetyltransferase -
  FDP16_RS02305 (FDP16_02400) - 455619..456857 (+) 1239 WP_176798424.1 LCP family protein -
  FDP16_RS02310 (FDP16_02405) - 456979..457266 (-) 288 WP_176798425.1 hypothetical protein -
  FDP16_RS02315 (FDP16_02410) - 457276..457686 (-) 411 WP_176798426.1 HIT family protein -
  FDP16_RS02320 (FDP16_02415) pptA 457755..458486 (+) 732 WP_176798427.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS02325 (FDP16_02420) - 458483..459529 (+) 1047 WP_176798428.1 ABC transporter permease -
  FDP16_RS02330 (FDP16_02425) ccrZ 459580..460374 (+) 795 WP_002893562.1 cell cycle regulator CcrZ -
  FDP16_RS02335 (FDP16_02430) trmB 460371..461009 (+) 639 WP_176798429.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FDP16_RS02340 (FDP16_02435) rimP 461209..461697 (+) 489 WP_032908080.1 ribosome maturation factor RimP -
  FDP16_RS02345 (FDP16_02440) nusA 461757..463013 (+) 1257 WP_256254470.1 transcription termination factor NusA -
  FDP16_RS02350 (FDP16_02445) rnpM 463024..463320 (+) 297 WP_176798431.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27218.69 Da        Isoelectric Point: 4.6594

>NTDB_id=367207 FDP16_RS02320 WP_176798427.1 457755..458486(+) (pptA) [Streptococcus sanguinis strain CGMH058]
MLEIKELTGGYVNIPVLKDVSFEVGNGQLVGLIGLNGAGKSTTINEIIGLLTPYKGQIQIDGLELRTNPSDYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDIEQETAFKRVDKLLEMFRLEEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPIAIADLIQLLDEEKKKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGSLTELRAQFQMPDASLNDIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=367207 FDP16_RS02320 WP_176798427.1 457755..458486(+) (pptA) [Streptococcus sanguinis strain CGMH058]
ATGTTAGAAATCAAAGAGCTTACGGGCGGCTATGTTAATATCCCGGTTTTAAAGGATGTCAGCTTTGAAGTGGGCAATGG
TCAGCTGGTTGGTCTGATTGGTCTCAACGGCGCGGGTAAGTCCACTACTATCAATGAGATTATTGGTCTTCTGACGCCTT
ATAAGGGGCAGATTCAGATTGATGGACTGGAGCTGCGGACCAATCCCAGCGATTACCGCAAGAAGATCGGTTTTATTCCG
GAAACGCCTAGTCTTTACGAAGAATTAACCTTGCGCGAGCACATTGAGACGGTAGCTATGGCATACGACATTGAGCAGGA
GACAGCTTTTAAGCGTGTGGATAAGTTGCTGGAAATGTTCCGACTCGAGGAAAAATTGGATTGGTTCCCTGTTCACTTTT
CAAAAGGGATGAAGCAAAAAGTGATGATTATCTGTGCTTTTGTAGTTGATCCCAGCCTTTTTATTGTGGATGAGCCTTTT
CTGGGTCTGGATCCGATAGCTATTGCAGACCTTATCCAGCTCTTGGATGAGGAAAAGAAGAAGGGCAAGTCCATTCTGAT
GAGCACCCATGTTCTGGACTCTGCTGAGAAGATGTGCGATAGTTTTGTAATTCTGCACAAGGGTCAAGTGCGGGCCAAGG
GCAGCTTGACTGAGTTGCGTGCTCAATTTCAAATGCCGGATGCTAGTCTGAATGACATCTATCTAGCCCTGACAGAAGAG
GCAGCGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.059

98.354

0.728
  pptA Streptococcus thermophilus LMD-9

73.222

98.354

0.72

Multiple sequence alignment