Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GWK05_RS09965 Genome accession   NZ_CP048107
Coordinates   2115241..2116668 (-) Length   475 a.a.
NCBI ID   WP_089438519.1    Uniprot ID   -
Organism   Escherichia coli strain 201609     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2110241..2121668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK05_RS09935 (GWK05_09915) yeeZ 2110296..2111120 (+) 825 WP_072652776.1 SDR family oxidoreductase -
  GWK05_RS09940 (GWK05_09920) yeeY 2111166..2112095 (+) 930 WP_001759301.1 LysR substrate-binding domain-containing protein -
  GWK05_RS09945 (GWK05_09925) yoeI 2112310..2112372 (+) 63 WP_010723108.1 membrane protein YoeI -
  GWK05_RS09950 (GWK05_09930) plaP 2112362..2113720 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GWK05_RS09955 (GWK05_09935) tsuA 2113899..2114957 (+) 1059 WP_001759318.1 thiosulfate utilization transporter TsuA/YeeE -
  GWK05_RS09960 (GWK05_09940) tsuB 2114971..2115198 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GWK05_RS09965 (GWK05_09945) sbcB 2115241..2116668 (-) 1428 WP_089438519.1 exodeoxyribonuclease I Machinery gene
  GWK05_RS09970 (GWK05_09950) dacD 2116877..2118043 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GWK05_RS09975 (GWK05_09955) sbmC 2118162..2118635 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  GWK05_RS09980 (GWK05_09960) yeeA 2118833..2119891 (+) 1059 WP_089438520.1 FUSC family protein -
  GWK05_RS09985 (GWK05_09965) tmaR 2120063..2120392 (+) 330 WP_000450409.1 DUF496 family protein -
  GWK05_RS09990 (GWK05_09970) - 2120493..2120675 (-) 183 WP_024167529.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.75 Da        Isoelectric Point: 5.2416

>NTDB_id=367170 GWK05_RS09965 WP_089438519.1 2115241..2116668(-) (sbcB) [Escherichia coli strain 201609]
MMNDDKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=367170 GWK05_RS09965 WP_089438519.1 2115241..2116668(-) (sbcB) [Escherichia coli strain 201609]
ATGATGAATGACGATAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCAAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGGAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment