Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FHE73_RS12530 Genome accession   NZ_CP040782
Coordinates   2384001..2384279 (+) Length   92 a.a.
NCBI ID   WP_000842217.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HM-311     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379001..2389279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS12510 (FHE73_12510) - 2380678..2381487 (+) 810 WP_000664545.1 papain-like cysteine protease family protein -
  FHE73_RS12515 (FHE73_12515) - 2381513..2382115 (+) 603 WP_000517278.1 hypothetical protein -
  FHE73_RS12520 (FHE73_12520) - 2382357..2382608 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  FHE73_RS12525 (FHE73_12525) - 2382983..2383861 (+) 879 WP_000397975.1 helix-turn-helix domain-containing protein -
  FHE73_RS12530 (FHE73_12530) abrB 2384001..2384279 (+) 279 WP_000842217.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FHE73_RS12535 (FHE73_12535) - 2384801..2386051 (+) 1251 WP_046946296.1 hypothetical protein -
  FHE73_RS12540 (FHE73_12540) - 2386119..2386877 (+) 759 WP_046946295.1 TSUP family transporter -
  FHE73_RS12545 (FHE73_12545) - 2387130..2387789 (+) 660 WP_000876936.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10392.30 Da        Isoelectric Point: 10.0092

>NTDB_id=367132 FHE73_RS12530 WP_000842217.1 2384001..2384279(+) (abrB) [Bacillus thuringiensis strain HM-311]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEEQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=367132 FHE73_RS12530 WP_000842217.1 2384001..2384279(+) (abrB) [Bacillus thuringiensis strain HM-311]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGAGCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATCGTAAGTCCAAACGGTATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5

Multiple sequence alignment