Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FHE73_RS09910 Genome accession   NZ_CP040782
Coordinates   1904389..1904676 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis strain HM-311     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899389..1909676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS09890 (FHE73_09890) - 1900565..1900762 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  FHE73_RS09895 (FHE73_09895) - 1900794..1901255 (+) 462 WP_000024999.1 NUDIX hydrolase -
  FHE73_RS09900 (FHE73_09900) nadE 1901305..1902123 (-) 819 WP_046945370.1 ammonia-dependent NAD(+) synthetase -
  FHE73_RS09905 (FHE73_09905) - 1902393..1904273 (+) 1881 WP_001025968.1 FtsX-like permease family protein -
  FHE73_RS09910 (FHE73_09910) abrB 1904389..1904676 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FHE73_RS09915 (FHE73_09915) - 1904951..1905898 (+) 948 WP_000099754.1 serine protease -
  FHE73_RS09920 (FHE73_09920) - 1905940..1906248 (-) 309 WP_046945368.1 helix-turn-helix transcriptional regulator -
  FHE73_RS09925 (FHE73_09925) - 1906355..1907290 (+) 936 WP_000877961.1 aldo/keto reductase -
  FHE73_RS09930 (FHE73_09930) - 1907338..1908513 (+) 1176 WP_089148990.1 MFS transporter -
  FHE73_RS31590 (FHE73_09935) - 1908562..1908768 (+) 207 WP_001101743.1 hypothetical protein -
  FHE73_RS09940 (FHE73_09940) - 1908912..1909274 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=367129 FHE73_RS09910 WP_000648325.1 1904389..1904676(+) (abrB) [Bacillus thuringiensis strain HM-311]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=367129 FHE73_RS09910 WP_000648325.1 1904389..1904676(+) (abrB) [Bacillus thuringiensis strain HM-311]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment