Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GWG09_RS20890 Genome accession   NZ_CP048025
Coordinates   4384233..4384838 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GZEC065     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4379233..4389838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG09_RS25185 - 4379787..4379885 (+) 99 Protein_4107 hypothetical protein -
  GWG09_RS20860 (GWG09_20835) rsmS 4379938..4380099 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GWG09_RS20865 (GWG09_20840) priC 4380113..4380640 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  GWG09_RS20870 (GWG09_20845) ybaN 4380710..4381087 (+) 378 WP_001188905.1 DUF454 family protein -
  GWG09_RS20875 (GWG09_20850) apt 4381240..4381791 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GWG09_RS20880 (GWG09_20855) dnaX 4381920..4383851 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  GWG09_RS20885 (GWG09_20860) ybaB 4383904..4384233 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GWG09_RS20890 (GWG09_20865) recR 4384233..4384838 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GWG09_RS20895 (GWG09_20870) htpG 4384948..4386822 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  GWG09_RS20900 (GWG09_20875) adk 4387003..4387647 (+) 645 WP_001220233.1 adenylate kinase -
  GWG09_RS20905 (GWG09_20880) hemH 4387883..4388845 (+) 963 WP_001250088.1 ferrochelatase -
  GWG09_RS20910 (GWG09_20885) aes 4388842..4389801 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=367129 GWG09_RS20890 WP_001195025.1 4384233..4384838(+) (recR) [Escherichia coli strain GZEC065]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=367129 GWG09_RS20890 WP_001195025.1 4384233..4384838(+) (recR) [Escherichia coli strain GZEC065]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment