Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FHE73_RS08000 Genome accession   NZ_CP040782
Coordinates   1529209..1529811 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain HM-311     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524209..1534811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS07980 (FHE73_07980) dnaD 1524530..1525237 (+) 708 WP_000727172.1 DNA replication protein DnaD -
  FHE73_RS07985 (FHE73_07985) nth 1525253..1525900 (+) 648 WP_000933036.1 endonuclease III -
  FHE73_RS07990 (FHE73_07990) - 1525904..1526422 (+) 519 WP_000442648.1 YpoC family protein -
  FHE73_RS07995 (FHE73_07995) - 1526449..1529142 (-) 2694 WP_089149056.1 PBP1A family penicillin-binding protein -
  FHE73_RS08000 (FHE73_08000) recU 1529209..1529811 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  FHE73_RS08005 (FHE73_08005) - 1529915..1530940 (+) 1026 WP_089149057.1 DUF2515 domain-containing protein -
  FHE73_RS31970 - 1531092..1531271 (-) 180 WP_001987054.1 hypothetical protein -
  FHE73_RS08010 (FHE73_08010) - 1531357..1531599 (+) 243 WP_001252036.1 hypothetical protein -
  FHE73_RS08015 (FHE73_08015) - 1531615..1531959 (+) 345 WP_000786940.1 YppE family protein -
  FHE73_RS08020 (FHE73_08020) - 1531986..1532177 (-) 192 WP_000242653.1 YppF family protein -
  FHE73_RS08025 (FHE73_08025) - 1532355..1532882 (+) 528 WP_000487630.1 YppG family protein -
  FHE73_RS08030 (FHE73_08030) - 1533039..1533470 (+) 432 WP_000546272.1 CotD family spore coat protein -
  FHE73_RS08035 (FHE73_08035) - 1533527..1534081 (+) 555 WP_000864832.1 DUF1273 domain-containing protein -
  FHE73_RS08040 (FHE73_08040) gpsB 1534179..1534514 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=367128 FHE73_RS08000 WP_000155598.1 1529209..1529811(-) (recU) [Bacillus thuringiensis strain HM-311]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=367128 FHE73_RS08000 WP_000155598.1 1529209..1529811(-) (recU) [Bacillus thuringiensis strain HM-311]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment