Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FHE73_RS06700 Genome accession   NZ_CP040782
Coordinates   1286090..1286413 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain HM-311     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281090..1291413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS06675 (FHE73_06675) - 1281437..1282723 (+) 1287 WP_089149008.1 D-alanyl-D-alanine carboxypeptidase family protein -
  FHE73_RS06680 (FHE73_06680) - 1282914..1283483 (+) 570 WP_000767792.1 signal peptidase I -
  FHE73_RS06685 (FHE73_06685) - 1283544..1284131 (+) 588 WP_000172854.1 CalY family protein -
  FHE73_RS06690 (FHE73_06690) - 1284266..1285036 (+) 771 WP_175423353.1 DUF4047 domain-containing protein -
  FHE73_RS06695 (FHE73_06695) calY 1285422..1286015 (+) 594 WP_000053710.1 biofilm matrix protein CalY -
  FHE73_RS06700 (FHE73_06700) sinR 1286090..1286413 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  FHE73_RS06705 (FHE73_06705) - 1286493..1286627 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  FHE73_RS06710 (FHE73_06710) inhA1 1286970..1289360 (+) 2391 WP_089149010.1 M6 family metalloprotease immune inhibitor InhA1 -
  FHE73_RS06715 (FHE73_06715) - 1289532..1290899 (+) 1368 WP_089149011.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=367126 FHE73_RS06700 WP_000578885.1 1286090..1286413(-) (sinR) [Bacillus thuringiensis strain HM-311]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=367126 FHE73_RS06700 WP_000578885.1 1286090..1286413(-) (sinR) [Bacillus thuringiensis strain HM-311]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment