Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GWG09_RS16595 | Genome accession | NZ_CP048025 |
| Coordinates | 3468216..3468752 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A370V115 |
| Organism | Escherichia coli strain GZEC065 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3463216..3473752
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWG09_RS16575 (GWG09_16560) | aphA | 3463505..3464218 (+) | 714 | WP_001317548.1 | acid phosphatase AphA | - |
| GWG09_RS16580 (GWG09_16565) | yjbQ | 3464329..3464745 (+) | 417 | WP_000270383.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| GWG09_RS16585 (GWG09_16570) | yjbR | 3464749..3465105 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| GWG09_RS16590 (GWG09_16575) | uvrA | 3465140..3467962 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | Machinery gene |
| GWG09_RS16595 (GWG09_16580) | ssb | 3468216..3468752 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| GWG09_RS16600 (GWG09_16585) | yjcB | 3468851..3469132 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| GWG09_RS16605 (GWG09_16590) | pdeC | 3469562..3471148 (+) | 1587 | WP_064055534.1 | c-di-GMP phosphodiesterase PdeC | - |
| GWG09_RS16610 (GWG09_16595) | soxS | 3471151..3471474 (-) | 324 | WP_000019364.1 | superoxide response transcriptional regulator SoxS | - |
| GWG09_RS16615 (GWG09_16600) | soxR | 3471560..3472024 (+) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=367118 GWG09_RS16595 WP_000168305.1 3468216..3468752(+) (ssb) [Escherichia coli strain GZEC065]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=367118 GWG09_RS16595 WP_000168305.1 3468216..3468752(+) (ssb) [Escherichia coli strain GZEC065]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |