Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FGL66_RS07055 Genome accession   NZ_CP040781
Coordinates   1440996..1441712 (+) Length   238 a.a.
NCBI ID   WP_180809142.1    Uniprot ID   -
Organism   Staphylococcus sp. 17KM0847     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435996..1446712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL66_RS07025 (FGL66_06975) - 1436231..1437205 (-) 975 WP_180809137.1 SdrH family protein -
  FGL66_RS07030 (FGL66_06980) - 1437373..1438176 (+) 804 WP_180809138.1 carbon-nitrogen family hydrolase -
  FGL66_RS09965 (FGL66_06985) - 1438480..1438557 (-) 78 WP_142381183.1 delta-lysin family phenol-soluble modulin -
  FGL66_RS07040 (FGL66_06990) - 1438944..1439516 (+) 573 WP_180809139.1 accessory gene regulator AgrB -
  FGL66_RS07045 (FGL66_06995) agrD 1439513..1439650 (+) 138 WP_180809140.1 cyclic lactone autoinducer peptide AgrD -
  FGL66_RS07050 (FGL66_07000) agrC 1439684..1440982 (+) 1299 WP_180809141.1 quorum-sensing sensor histidine kinase AgrC -
  FGL66_RS07055 (FGL66_07005) agrA 1440996..1441712 (+) 717 WP_180809142.1 quorum-sensing response regulator AgrA Regulator
  FGL66_RS07060 (FGL66_07010) - 1441834..1442781 (-) 948 WP_180809143.1 carbohydrate kinase -
  FGL66_RS07065 (FGL66_07015) - 1442774..1444267 (-) 1494 WP_180809144.1 sucrose-6-phosphate hydrolase -
  FGL66_RS07070 (FGL66_07020) - 1444285..1445271 (-) 987 WP_180809145.1 LacI family DNA-binding transcriptional regulator -
  FGL66_RS07075 (FGL66_07025) - 1445418..1445642 (-) 225 WP_180809146.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27975.01 Da        Isoelectric Point: 5.0805

>NTDB_id=367102 FGL66_RS07055 WP_180809142.1 1440996..1441712(+) (agrA) [Staphylococcus sp. 17KM0847]
MKILICEDDPKQRKRMEDIINNYIMIEEKPMEIEVSTDDPYVLLEASKNMADVGCYFLDIQLESDINGIKVGSEIRKHDP
IGNIIYVTSHSELTYLTFVYKVAAMDFIFKDDPSELQTRIIDCLETALKRLDLLTKDSNIETLELKRGSNSEYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKEMAQIDDRFFRCHNSFVLNRKNISHIDAKERIVYFKNNEFCYVSVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=367102 FGL66_RS07055 WP_180809142.1 1440996..1441712(+) (agrA) [Staphylococcus sp. 17KM0847]
ATGAAAATCTTAATTTGCGAAGATGATCCAAAACAACGCAAGCGCATGGAAGATATTATTAATAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAGTTTCAACTGATGATCCATATGTACTATTAGAAGCTTCAAAAAATATGGCTGATGTGG
GATGCTATTTTTTAGATATCCAGTTAGAATCTGATATTAATGGCATTAAAGTGGGGAGTGAGATTCGAAAACATGACCCT
ATTGGTAATATCATTTATGTTACCAGTCATAGTGAACTGACATACCTGACTTTTGTTTATAAAGTCGCAGCAATGGATTT
TATTTTTAAAGACGATCCCTCCGAATTACAAACTCGAATTATTGATTGCTTAGAAACTGCTTTAAAACGCTTGGACTTAC
TTACAAAAGATAGCAATATAGAAACATTAGAACTCAAGCGTGGCAGTAATTCTGAGTATGTAAATTATGATGATGTTATG
TTTTTTGAGTCTTCTCCAAAATCTCATCGGCTTATCGCACATTTAGATAATCGCCAAATTGAGTTTTATGGTAATTTAAA
AGAAATGGCTCAAATTGATGATCGCTTTTTCCGTTGTCACAATAGTTTTGTACTGAATCGTAAAAATATTTCCCATATTG
ATGCTAAAGAACGTATTGTTTACTTTAAAAATAATGAGTTCTGTTACGTATCTGTACGTAATATTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

80.252

100

0.803

Multiple sequence alignment