Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FG342_RS03845 Genome accession   NZ_CP040780
Coordinates   759189..760988 (-) Length   599 a.a.
NCBI ID   WP_047677754.1    Uniprot ID   A0A249DAC5
Organism   Lacticaseibacillus rhamnosus strain 1.0320     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 754189..765988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG342_RS03820 - 755331..755675 (+) 345 WP_005694534.1 hypothetical protein -
  FG342_RS03825 - 755840..756559 (+) 720 WP_005685357.1 metal ABC transporter ATP-binding protein -
  FG342_RS03830 - 756556..757353 (+) 798 WP_005685358.1 metal ABC transporter permease -
  FG342_RS03835 - 757466..758314 (-) 849 WP_047677749.1 metallophosphoesterase family protein -
  FG342_RS03840 - 758311..759192 (-) 882 WP_047677750.1 NAD(P)-dependent oxidoreductase -
  FG342_RS03845 pepF 759189..760988 (-) 1800 WP_047677754.1 oligoendopeptidase F Regulator
  FG342_RS03850 - 761117..762211 (+) 1095 WP_049170396.1 LCP family protein -
  FG342_RS03855 brnQ 762320..763699 (-) 1380 WP_005685364.1 branched-chain amino acid transport system II carrier protein -
  FG342_RS03860 - 764265..764945 (-) 681 WP_047678722.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67200.15 Da        Isoelectric Point: 5.4358

>NTDB_id=367053 FG342_RS03845 WP_047677754.1 759189..760988(-) (pepF) [Lacticaseibacillus rhamnosus strain 1.0320]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYTLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAARYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLTELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=367053 FG342_RS03845 WP_047677754.1 759189..760988(-) (pepF) [Lacticaseibacillus rhamnosus strain 1.0320]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAGGCGGCCGTCGCACTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCTGTACTTGCGGTTTTTCGACGTTTCGAAAAGGTTTATGTCTATTCAAGCTTAAAA
AGCGATCAAGATACCGGTAATGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCTTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCATGGCGTGACACTGAAAGCTTGAAGC
CATTCGGACATTTTATTGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCTTTGATTGCAAGT
GCAGGCGATGCATTAAATGCCAGTCACGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAGTTGATTCGCTCGACTAACCGTAAATTACGCAAGG
AGGCTTTCGAGGCCCTTCTGCGTGCTTACGAAAGTTTGAAAAATACGTTTGCGCAAACGTTAAGTGGTCAAGTGAAAGCC
CATAATTTCAACGCGACGGCTCATCATTACAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTGCCGCTTTTACATCGTTATGTCGCCTTGCGTAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATACGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAAAATAAAGGCAAACGTTCAGGCGCCTATTCCGGTGGTGCTTATGATACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCCGTTGATGAACTCTATACGTTGGTTCACGAAACCGGTCACAGCGTCCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACAACCAACGAAAACCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATCCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAAGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCATTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTAACGGCC
ACCAGCATGTCACAATATTACGCCGATCTCAATGCCCGGTATTATGGACCGGAAGTGGCACGCGATCCGGAAATTGCGTT
TGAATGGGCCCGCATTCCGCACTTCTATTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGCAGCGGTGAACCTGACGCGGCTGCCCGTTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTTGAACA
GCGCTTGACGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A249DAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.941

99.332

0.526

Multiple sequence alignment