Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SAOV_RS01960 Genome accession   NC_017337
Coordinates   408163..409008 (+) Length   281 a.a.
NCBI ID   WP_001621659.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 403163..414008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS01945 (SAOV_0381c) - 403432..405273 (-) 1842 WP_000077329.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  SAOV_RS01950 (SAOV_0382c) metC 405242..406402 (-) 1161 WP_000175850.1 cystathionine beta-lyase MetC -
  SAOV_RS01955 (SAOV_0383c) - 406399..407502 (-) 1104 WP_000655709.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  SAOV_RS01960 (SAOV_0384) spo0J 408163..409008 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein Regulator
  SAOV_RS01965 (SAOV_0385) - 409162..410043 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  SAOV_RS01970 (SAOV_0386) - 410073..410276 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  SAOV_RS01975 (SAOV_0387) ychF 410288..411385 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  SAOV_RS01980 (SAOV_0388c) - 411471..411662 (-) 192 WP_001052483.1 hypothetical protein -
  SAOV_RS01985 (SAOV_0389) rpsF 411906..412202 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SAOV_RS01990 (SAOV_0390) ssbA 412223..412726 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SAOV_RS01995 (SAOV_0391) rpsR 412778..413020 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.82 Da        Isoelectric Point: 10.0000

>NTDB_id=36703 SAOV_RS01960 WP_001621659.1 408163..409008(+) (spo0J) [Staphylococcus aureus subsp. aureus ED133]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=36703 SAOV_RS01960 WP_001621659.1 408163..409008(+) (spo0J) [Staphylococcus aureus subsp. aureus ED133]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTACAAGGCTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAAAGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGCTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment