Detailed information NTG0366995

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GW576_RS05625
• Genome accession: NZ_CP048010
• Coordinates: 1093093..1094085 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RUT3575
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1088093..1099085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GW576_RS05595 (GW576_05580)	ispD	1088154..1088864 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GW576_RS05600 (GW576_05585)	ispF	1088864..1089343 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GW576_RS05605 (GW576_05590)	truD	1089340..1090389 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GW576_RS05610 (GW576_05595)	surE	1090370..1091131 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
GW576_RS05615 (GW576_05600)	pcm	1091125..1091751 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GW576_RS05620 (GW576_05605)	nlpD	1091936..1093030 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GW576_RS05625 (GW576_05610)	rpoS	1093093..1094085 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GW576_RS05630 (GW576_05615)	ygbN	1094179..1095543 (-)	1365	WP_000104456.1	GntP family transporter	-
GW576_RS05635 (GW576_05620)	ygbM	1095632..1096408 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
GW576_RS05640 (GW576_05625)	ygbL	1096413..1097051 (-)	639	WP_001278994.1	aldolase	-
GW576_RS05645 (GW576_05630)	otnK	1097048..1098310 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=366995 GW576_RS05625 WP_000081550.1 1093093..1094085(+) (rpoS) [Escherichia coli strain RUT3575]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=366995 GW576_RS05625 WP_000081550.1 1093093..1094085(+) (rpoS) [Escherichia coli strain RUT3575]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715