Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FF125_RS21300 Genome accession   NZ_CP040749
Coordinates   5039186..5040541 (+) Length   451 a.a.
NCBI ID   WP_138952156.1    Uniprot ID   A0A5B7TVK4
Organism   Aureibaculum algae strain 10Alg 115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5034186..5045541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF125_RS21275 (FF125_21275) - 5035419..5036048 (-) 630 WP_138952149.1 carbonic anhydrase family protein -
  FF125_RS21280 (FF125_21280) - 5036166..5036459 (-) 294 WP_138952151.1 hypothetical protein -
  FF125_RS21285 (FF125_21285) kbl 5036587..5037783 (+) 1197 WP_138952153.1 glycine C-acetyltransferase -
  FF125_RS21290 (FF125_21290) - 5037793..5038242 (+) 450 WP_138952154.1 6-carboxytetrahydropterin synthase -
  FF125_RS21295 (FF125_21295) - 5038419..5039186 (+) 768 WP_175418979.1 UDP-2,3-diacylglucosamine diphosphatase -
  FF125_RS21300 (FF125_21300) radA 5039186..5040541 (+) 1356 WP_138952156.1 DNA repair protein RadA Machinery gene
  FF125_RS21305 (FF125_21305) - 5040737..5041477 (-) 741 WP_138952158.1 class I SAM-dependent methyltransferase -
  FF125_RS21310 (FF125_21310) - 5041515..5042312 (-) 798 WP_138952159.1 ribonuclease E inhibitor RraB -
  FF125_RS21315 (FF125_21315) - 5042428..5043351 (-) 924 WP_138952161.1 DUF6845 domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49772.17 Da        Isoelectric Point: 6.1968

>NTDB_id=366990 FF125_RS21300 WP_138952156.1 5039186..5040541(+) (radA) [Aureibaculum algae strain 10Alg 115]
MAKTKTTFFCQNCGTQHAQWAGKCNVCNEWNTIVEEVIQKEEKRAWKQSSPSKKVAKPLKINDIAINEEDRIDTQNNELN
RVLGGGLVKGSMTLLGGEPGIGKSTLILQVALTINKKVLYVSGEESQSQIKMRAERLKNTNTECLILTETKTQNIFKSIE
ETQPDVVVIDSIQTLQTDAIEASPGSISQIRETTAELIKFAKETATPVILIGHITKEGTIAGPKILEHMVDVVLQFEGDR
NHTYRILRAQKNRFGSTAELGIYEMQGSGLREVENPSEILISEKDESLSGTAIGATLEGMRPLMIEVQALVSTAVYGTPQ
RSTTGYNTKRLNMILAVLEKRAGFRLGAKDVFLNIAGGISVDDPAIDLAVVASILSSNEDEAIPQDYCFAAEVGLAGEIR
PVNRVEQRILEAEKLGFQKIMVSKYNKIPSKKYNIKIVLVSKIEDVYQQLF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=366990 FF125_RS21300 WP_138952156.1 5039186..5040541(+) (radA) [Aureibaculum algae strain 10Alg 115]
ATGGCCAAAACGAAAACAACCTTTTTCTGTCAAAATTGCGGTACACAACACGCTCAATGGGCAGGTAAATGTAATGTATG
TAACGAATGGAATACCATTGTTGAAGAAGTAATTCAAAAAGAAGAAAAACGTGCTTGGAAACAATCTTCACCTTCCAAAA
AGGTAGCAAAACCCCTAAAGATAAATGATATTGCCATTAATGAAGAAGATAGAATTGACACTCAAAACAATGAGCTCAAT
AGAGTATTAGGTGGGGGCTTAGTAAAAGGTTCTATGACGCTATTAGGTGGCGAACCTGGTATTGGTAAGTCAACCTTGAT
TTTGCAAGTAGCCTTAACCATAAATAAAAAAGTACTATATGTTTCGGGCGAGGAAAGTCAATCGCAAATTAAAATGCGAG
CAGAAAGGCTTAAAAACACTAATACAGAATGTTTGATTCTTACTGAAACTAAAACCCAAAACATCTTTAAAAGTATAGAA
GAAACTCAACCAGATGTCGTTGTAATTGACTCTATTCAAACTTTACAAACTGATGCTATTGAAGCGTCACCTGGTAGTAT
TTCTCAAATACGAGAAACCACTGCTGAACTCATAAAATTTGCTAAAGAAACGGCAACACCTGTTATTTTAATTGGTCATA
TTACCAAAGAAGGAACTATTGCAGGACCAAAAATTTTAGAACACATGGTAGATGTGGTTTTACAGTTTGAAGGCGACAGA
AACCATACCTATCGTATTTTACGAGCACAGAAAAACCGTTTCGGTTCCACTGCAGAACTTGGTATTTACGAAATGCAAGG
TTCAGGATTACGAGAAGTTGAAAACCCATCTGAAATACTGATTTCAGAAAAGGACGAATCTTTAAGCGGTACTGCTATTG
GAGCAACATTAGAAGGCATGCGACCCTTAATGATAGAAGTTCAAGCTTTAGTGAGCACAGCTGTTTACGGTACACCTCAA
CGATCAACAACAGGTTATAATACAAAAAGGCTCAATATGATTTTAGCCGTATTAGAAAAACGAGCAGGATTCCGTTTGGG
TGCAAAAGATGTCTTTTTAAATATTGCAGGGGGAATTTCAGTAGACGACCCAGCAATTGATTTAGCAGTTGTAGCTTCTA
TACTTTCTTCGAATGAAGATGAAGCCATTCCTCAAGATTATTGCTTTGCTGCTGAAGTTGGTTTGGCGGGTGAAATTAGA
CCCGTTAATCGTGTTGAACAACGCATTTTAGAAGCTGAAAAACTTGGGTTTCAAAAAATTATGGTATCTAAATACAACAA
AATTCCATCTAAAAAGTATAACATTAAAATAGTACTCGTTTCTAAAATTGAAGATGTATATCAGCAGTTATTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(313-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7TVK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

49.561

100

0.501
  radA Streptococcus mitis SK321

49.451

100

0.499
  radA Streptococcus pneumoniae Rx1

49.234

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.234

100

0.499
  radA Streptococcus pneumoniae D39

49.234

100

0.499
  radA Streptococcus pneumoniae R6

49.234

100

0.499
  radA Bacillus subtilis subsp. subtilis str. 168

51.628

95.344

0.492

Multiple sequence alignment