Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FED49_RS11935 Genome accession   NZ_CP040747
Coordinates   2284462..2285232 (-) Length   256 a.a.
NCBI ID   WP_135226690.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2279462..2290232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS11915 - 2279555..2280376 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  FED49_RS11920 - 2280402..2281040 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  FED49_RS11925 glyS 2281207..2283252 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  FED49_RS11930 glyQ 2283245..2284132 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  FED49_RS11935 recO 2284462..2285232 (-) 771 WP_135226690.1 DNA repair protein RecO Machinery gene
  FED49_RS11940 - 2285268..2285411 (-) 144 WP_008342408.1 YqzL family protein -
  FED49_RS11945 era 2285607..2286512 (-) 906 WP_007501305.1 GTPase Era -
  FED49_RS11950 - 2286505..2286903 (-) 399 WP_008342410.1 cytidine deaminase -
  FED49_RS11955 - 2287016..2287402 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  FED49_RS11960 ybeY 2287380..2287859 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  FED49_RS11965 - 2287860..2289974 (-) 2115 WP_370648338.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29379.06 Da        Isoelectric Point: 8.4348

>NTDB_id=366953 FED49_RS11935 WP_135226690.1 2284462..2285232(-) (recO) [Bacillus altitudinis strain HQ-51-Ba]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFEFLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=366953 FED49_RS11935 WP_135226690.1 2284462..2285232(-) (recO) [Bacillus altitudinis strain HQ-51-Ba]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAATTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.172

100

0.762

Multiple sequence alignment