Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FED49_RS10440 Genome accession   NZ_CP040747
Coordinates   2020538..2021173 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015538..2026173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS10400 - 2015702..2016820 (+) 1119 WP_234891372.1 NADH-dependent flavin oxidoreductase -
  FED49_RS10405 - 2016870..2017376 (-) 507 WP_074041977.1 PTS glucose transporter subunit IIA -
  FED49_RS10410 - 2017545..2017964 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  FED49_RS10415 - 2017986..2018438 (-) 453 WP_017359729.1 YppG family protein -
  FED49_RS10420 - 2018547..2018927 (-) 381 WP_225310452.1 YppE family protein -
  FED49_RS10425 - 2018977..2019210 (-) 234 WP_231131595.1 DUF5446 family protein -
  FED49_RS10430 sspM 2019407..2019511 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  FED49_RS10435 - 2019535..2020491 (-) 957 WP_007500870.1 DUF2515 domain-containing protein -
  FED49_RS10440 recU 2020538..2021173 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  FED49_RS10445 - 2021193..2023883 (+) 2691 WP_138825972.1 PBP1A family penicillin-binding protein -
  FED49_RS10450 - 2023919..2024428 (-) 510 WP_007500874.1 YpoC family protein -
  FED49_RS10455 nth 2024425..2025087 (-) 663 WP_008344602.1 endonuclease III -
  FED49_RS10460 - 2025105..2025809 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=366947 FED49_RS10440 WP_017359733.1 2020538..2021173(+) (recU) [Bacillus altitudinis strain HQ-51-Ba]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=366947 FED49_RS10440 WP_017359733.1 2020538..2021173(+) (recU) [Bacillus altitudinis strain HQ-51-Ba]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAC
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATATAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment