Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FED49_RS09010 Genome accession   NZ_CP040747
Coordinates   1742864..1743244 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1737864..1748244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS09000 - 1739587..1740495 (+) 909 WP_008343827.1 trypsin-like serine peptidase -
  FED49_RS09005 - 1740642..1742636 (+) 1995 WP_138825813.1 glycosyltransferase family 39 protein -
  FED49_RS09010 nucA/comI 1742864..1743244 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FED49_RS09015 - 1743388..1744236 (+) 849 WP_017359585.1 STAS domain-containing protein -
  FED49_RS09020 - 1744269..1744811 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  FED49_RS09025 - 1745108..1745545 (+) 438 WP_057079489.1 hypothetical protein -
  FED49_RS09030 lexA 1745593..1746213 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  FED49_RS09035 yneA 1746373..1746684 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  FED49_RS09040 - 1746702..1747349 (+) 648 WP_138825815.1 recombinase family protein -
  FED49_RS09045 - 1747419..1747649 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=366946 FED49_RS09010 WP_224559893.1 1742864..1743244(+) (nucA/comI) [Bacillus altitudinis strain HQ-51-Ba]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=366946 FED49_RS09010 WP_224559893.1 1742864..1743244(+) (nucA/comI) [Bacillus altitudinis strain HQ-51-Ba]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment