Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FED49_RS07315 Genome accession   NZ_CP040747
Coordinates   1398729..1399007 (+) Length   92 a.a.
NCBI ID   WP_138825684.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393729..1404007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS07295 - 1393821..1394096 (-) 276 WP_008345136.1 hypothetical protein -
  FED49_RS07300 - 1394241..1395860 (+) 1620 WP_007498620.1 ABC-F family ATP-binding cassette domain-containing protein -
  FED49_RS07305 - 1395901..1397133 (-) 1233 WP_008345134.1 aminopeptidase -
  FED49_RS19295 - 1397239..1397370 (-) 132 WP_003210922.1 protein YkpC -
  FED49_RS07310 mreBH 1397445..1398452 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  FED49_RS07315 abrB 1398729..1399007 (+) 279 WP_138825684.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FED49_RS07320 - 1399152..1400441 (+) 1290 WP_007498613.1 ATP-binding protein -
  FED49_RS07325 - 1400469..1401311 (+) 843 WP_035700616.1 gamma-glutamylcyclotransferase -
  FED49_RS07330 - 1401349..1402017 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10348.05 Da        Isoelectric Point: 4.5447

>NTDB_id=366941 FED49_RS07315 WP_138825684.1 1398729..1399007(+) (abrB) [Bacillus altitudinis strain HQ-51-Ba]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEVLQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=366941 FED49_RS07315 WP_138825684.1 1398729..1399007(+) (abrB) [Bacillus altitudinis strain HQ-51-Ba]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGTCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment