Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GSS20_RS10730 Genome accession   NZ_CP047995
Coordinates   2300663..2301262 (-) Length   199 a.a.
NCBI ID   WP_025818486.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2295663..2306262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS10705 (GSS20_11275) - 2295768..2296427 (-) 660 WP_005397228.1 helix-turn-helix transcriptional regulator -
  GSS20_RS10710 (GSS20_11280) - 2296456..2297733 (-) 1278 WP_140391451.1 serine dehydratase subunit alpha family protein -
  GSS20_RS10715 (GSS20_11285) - 2297749..2298129 (-) 381 WP_005479566.1 RidA family protein -
  GSS20_RS10720 (GSS20_11290) - 2298447..2299706 (+) 1260 WP_005494432.1 amino acid permease -
  GSS20_RS10725 (GSS20_11295) aqpZ 2299913..2300611 (+) 699 WP_005460095.1 aquaporin Z -
  GSS20_RS10730 (GSS20_11300) recR 2300663..2301262 (-) 600 WP_025818486.1 recombination mediator RecR Machinery gene
  GSS20_RS10735 (GSS20_11305) - 2301293..2301622 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GSS20_RS10740 (GSS20_11310) dnaX 2301705..2303846 (-) 2142 WP_064484100.1 DNA polymerase III subunit gamma/tau -
  GSS20_RS10745 (GSS20_11315) apt 2303855..2304400 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GSS20_RS10750 (GSS20_11320) - 2304566..2304913 (-) 348 WP_023585236.1 YbaN family protein -
  GSS20_RS10755 (GSS20_11325) - 2304986..2305117 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21752.76 Da        Isoelectric Point: 5.7468

>NTDB_id=366936 GSS20_RS10730 WP_025818486.1 2300663..2301262(-) (recR) [Vibrio parahaemolyticus strain 20150710009]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALNQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=366936 GSS20_RS10730 WP_025818486.1 2300663..2301262(-) (recR) [Vibrio parahaemolyticus strain 20150710009]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAATCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432