Detailed information NTG0366922

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: GSS20_RS06485
• Genome accession: NZ_CP047995
• Coordinates: 1406471..1407451 (-)
• Length: 326 a.a.
• NCBI ID: WP_005454798.1
• Uniprot ID: Q87Q07
• Organism: Vibrio parahaemolyticus strain 20150710009
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1401471..1412451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSS20_RS06475 (GSS20_06865)	-	1401968..1404412 (+)	2445	WP_140391236.1	collagenase	-
GSS20_RS06480 (GSS20_06875)	-	1404665..1406461 (-)	1797	WP_140391237.1	aminopeptidase P family protein	-
GSS20_RS06485 (GSS20_06880)	amiE	1406471..1407451 (-)	981	WP_005454798.1	ABC transporter ATP-binding protein	Regulator
GSS20_RS06490 (GSS20_06885)	-	1407461..1408444 (-)	984	WP_162457599.1	ABC transporter ATP-binding protein	-
GSS20_RS06495 (GSS20_06890)	-	1408455..1409387 (-)	933	WP_020903869.1	ABC transporter permease subunit	-
GSS20_RS06500 (GSS20_06895)	oppB	1409397..1410317 (-)	921	WP_031846371.1	oligopeptide ABC transporter permease OppB	-
GSS20_RS06505 (GSS20_06900)	-	1410484..1412094 (-)	1611	WP_064484416.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36406.21 Da
• Isoelectric Point: 8.3113

>NTDB_id=366922 GSS20_RS06485 WP_005454798.1 1406471..1407451(-) (amiE) [Vibrio parahaemolyticus strain 20150710009]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide

• Length: 981 bp

>NTDB_id=366922 GSS20_RS06485 WP_005454798.1 1406471..1407451(-) (amiE) [Vibrio parahaemolyticus strain 20150710009]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGATTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCACATGACCTGAGCGTTGTGCGTCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (238-305)

• ABC transporter (ABC_tran) (35-186)

3D structure

• AlphaFold DB: Q87Q07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus thermophilus LMG 18311	40.514	95.399	0.386
amiE	Streptococcus thermophilus LMD-9	40.514	95.399	0.386
amiF	Streptococcus salivarius strain HSISS4	45.455	84.356	0.383
amiE	Streptococcus salivarius strain HSISS4	39.744	95.706	0.38
amiF	Streptococcus thermophilus LMG 18311	45.421	83.742	0.38
amiF	Streptococcus thermophilus LMD-9	45.055	83.742	0.377
oppD	Streptococcus mutans UA159	38.339	96.012	0.368