Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FED49_RS01985 Genome accession   NZ_CP040747
Coordinates   362758..363186 (-) Length   142 a.a.
NCBI ID   WP_138825043.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357758..368186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS01955 - 357901..358230 (+) 330 WP_007498247.1 YckD family protein -
  FED49_RS01960 - 358277..359041 (-) 765 WP_046342598.1 MBL fold metallo-hydrolase -
  FED49_RS01965 - 359157..359576 (+) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  FED49_RS01970 - 359601..360407 (+) 807 WP_138825039.1 aminoglycoside N(3)-acetyltransferase -
  FED49_RS01975 - 360409..360795 (-) 387 WP_041091056.1 competence protein ComJ -
  FED49_RS01980 - 360933..362630 (-) 1698 WP_138825041.1 methyl-accepting chemotaxis protein -
  FED49_RS01985 nucA/comI 362758..363186 (-) 429 WP_138825043.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FED49_RS01995 - 363553..365622 (+) 2070 WP_138825046.1 hydantoinase/oxoprolinase family protein -
  FED49_RS02000 - 365612..367597 (+) 1986 WP_138825047.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15868.87 Da        Isoelectric Point: 6.7516

>NTDB_id=366921 FED49_RS01985 WP_138825043.1 362758..363186(-) (nucA/comI) [Bacillus altitudinis strain HQ-51-Ba]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDAQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=366921 FED49_RS01985 WP_138825043.1 362758..363186(-) (nucA/comI) [Bacillus altitudinis strain HQ-51-Ba]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACCAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACTGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGCACAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGAGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.29

75.352

0.507

Multiple sequence alignment