Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FED49_RS00310 Genome accession   NZ_CP040747
Coordinates   46891..47181 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41891..52181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS00270 - 41924..42253 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  FED49_RS00275 - 42266..42706 (+) 441 WP_008341898.1 YaaR family protein -
  FED49_RS00280 holB 42718..43707 (+) 990 WP_057078756.1 DNA polymerase III subunit delta' -
  FED49_RS00285 - 43710..44537 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  FED49_RS00290 yabA 44552..44905 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  FED49_RS00295 - 44961..45704 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FED49_RS00300 - 45691..45990 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  FED49_RS00305 rsmI 45965..46846 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FED49_RS00310 abrB 46891..47181 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FED49_RS00320 metG 47701..49701 (+) 2001 WP_008341884.1 methionine--tRNA ligase -
  FED49_RS00325 - 49783..50550 (+) 768 WP_017359325.1 TatD family hydrolase -
  FED49_RS00330 - 50795..51997 (+) 1203 WP_046527644.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=366918 FED49_RS00310 WP_087975202.1 46891..47181(-) (abrB) [Bacillus altitudinis strain HQ-51-Ba]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=366918 FED49_RS00310 WP_087975202.1 46891..47181(-) (abrB) [Bacillus altitudinis strain HQ-51-Ba]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment