Detailed information NTG0366883

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: GSR97_RS15185
• Genome accession: NZ_CP047990
• Coordinates: 3243183..3245018 (-)
• Length: 611 a.a.
• NCBI ID: WP_053305071.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20140723005
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3238183..3250018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSR97_RS15160 (GSR97_15935)	trxA	3238445..3238771 (-)	327	WP_005458583.1	thioredoxin TrxA	-
GSR97_RS15165 (GSR97_15940)	rhlB	3238883..3240196 (+)	1314	WP_005458582.1	ATP-dependent RNA helicase RhlB	-
GSR97_RS15170 (GSR97_15945)	gppA	3240216..3241709 (+)	1494	WP_140384121.1	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	-
GSR97_RS15175 (GSR97_15950)	-	3241906..3242574 (-)	669	WP_005497391.1	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	-
GSR97_RS15180 (GSR97_15960)	-	3242868..3243173 (-)	306	WP_005458579.1	DUF3630 family protein	-
GSR97_RS15185 (GSR97_15965)	recQ	3243183..3245018 (-)	1836	WP_053305071.1	ATP-dependent DNA helicase RecQ	Machinery gene
GSR97_RS15190 (GSR97_15970)	rarD	3245193..3245939 (+)	747	Protein_2849	EamA family transporter RarD	-
GSR97_RS15195 (GSR97_15975)	-	3246476..3246841 (-)	366	WP_005451200.1	hypothetical protein	-
GSR97_RS15200 (GSR97_15980)	-	3246838..3249420 (-)	2583	WP_237305184.1	hypothetical protein	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69241.16 Da
• Isoelectric Point: 6.8897

>NTDB_id=366883 GSR97_RS15185 WP_053305071.1 3243183..3245018(-) (recQ) [Vibrio parahaemolyticus strain 20140723005]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAVRAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide

• Length: 1836 bp

>NTDB_id=366883 GSR97_RS15185 WP_053305071.1 3243183..3245018(-) (recQ) [Vibrio parahaemolyticus strain 20140723005]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCAACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTGATGCGTGACT
TCATCGAGCGCCTCGAAAATCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAATGGGGACACGAT
TTCCGTCCTGAATACGCCGCGCTGGGTCAGCTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGCTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGCTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCTATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGTATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
TCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGTACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• DEAD/DEAH box helicase (DEAD) (31-189)

• HRDC domain (HRDC) (537-603)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• RQC domain (RQC) (409-517)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.541	96.89	0.393