Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FG051_RS09620 Genome accession   NZ_CP040736
Coordinates   1932051..1933421 (-) Length   456 a.a.
NCBI ID   WP_057812711.1    Uniprot ID   -
Organism   Companilactobacillus futsaii strain Y97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927051..1938421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG051_RS09600 (FG051_09600) - 1927372..1927785 (-) 414 WP_057812662.1 Mini-ribonuclease 3 -
  FG051_RS09605 (FG051_09605) cysS 1927778..1929184 (-) 1407 WP_057812664.1 cysteine--tRNA ligase -
  FG051_RS09610 (FG051_09610) gltX 1929270..1930766 (-) 1497 WP_057812666.1 glutamate--tRNA ligase -
  FG051_RS09615 (FG051_09615) - 1930747..1932036 (-) 1290 WP_057812668.1 PIN/TRAM domain-containing protein -
  FG051_RS09620 (FG051_09620) radA 1932051..1933421 (-) 1371 WP_057812711.1 DNA repair protein RadA Machinery gene
  FG051_RS09625 (FG051_09625) - 1933441..1933983 (-) 543 WP_057812670.1 dUTP diphosphatase -
  FG051_RS09630 (FG051_09630) - 1934115..1934417 (+) 303 WP_057812672.1 GNAT family N-acetyltransferase -
  FG051_RS09635 (FG051_09635) rpiA 1934418..1935107 (+) 690 WP_057812674.1 ribose-5-phosphate isomerase RpiA -
  FG051_RS09640 (FG051_09640) - 1935132..1936475 (+) 1344 WP_057812676.1 aminopeptidase C -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49936.30 Da        Isoelectric Point: 7.3013

>NTDB_id=366872 FG051_RS09620 WP_057812711.1 1932051..1933421(-) (radA) [Companilactobacillus futsaii strain Y97]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVEQTTAKASATPSRRVSDLESKPVKIGDVSFEREPRIKTDMDEL
NRVLSGGIVPESLILIGGDPGIGKSTLLTQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIR
QTIDDMKPDFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLADANGSAVVVSMEGTRPILVEIQSLITPTVF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNTGIPGTDCFVGEVGLT
GEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=366872 FG051_RS09620 WP_057812711.1 1932051..1933421(-) (radA) [Companilactobacillus futsaii strain Y97]
TTGGCTAAAGCTAAAACAAAATTTGTATGTCAAAATTGTGGTTACGTTTCCCCAAAGTACTTAGGTCGCTGTCCTAACTG
TGGCGTGTGGAATCAAATGGTCGAAGAAGTTGAACAAACAACCGCCAAAGCTAGTGCTACACCTAGTCGTCGTGTCAGTG
ATTTGGAGTCTAAACCCGTTAAAATTGGGGATGTTTCCTTTGAAAGAGAACCTCGAATCAAGACTGATATGGACGAATTG
AATCGAGTTCTCAGTGGTGGAATCGTACCAGAGTCTTTGATTTTAATCGGTGGAGATCCGGGAATCGGGAAGTCAACGCT
TTTGACCCAAGTTTCCGGACAACTGCAAAAGACCGGTGGCAAGGTTTTGTACGTTTCTGGTGAAGAGAGTGCTTCACAAA
TTAAAATGCGAGCTGACCGGTTAGGCATCAAGGGCGATAATTTATACATTTATCCACAGACTGATATGAGTTATATTCGT
CAAACCATCGATGATATGAAACCAGATTTTCTCATTATTGATTCTGTACAGACGATGGATGAGCCGGAGATTTCTTCTGC
TGTTGGTAGCATTTCCCAAATTCGTGAAGTAACAGCTGAACTGATGAACATTGCTAAACAACAAAACATTACCGTCTTTG
TTGTGGGGCATGTAACTAAAGGTGGTGCCATTGCCGGTCCAAAGATTTTGGAACACATGGTAGATACAGTTTTGTATTTT
GAAGGTGACACTCATCACAGTTATCGGATTTTACGTTCAGTTAAAAATCGTTTTGGTTCAACTAACGAAATTGGTATTTT
TGAAATGCGGACTAAAGGTTTAGTTGAAGTGGCCAACCCATCTGAGATTTTCTTAGAAGAACGTTTAGCCGATGCTAATG
GGTCTGCGGTAGTAGTCTCAATGGAAGGAACCAGACCAATTTTGGTTGAAATTCAATCTTTGATCACACCAACAGTATTT
GGCAATGCTAAGAGAACCGCAACTGGCTTAGATCATAATCGGGTTTCAGTTATTATGGCGGTACTGGAAAAACGTGGTAA
TTTGATGCTTCAAAACCAAGATGCCTATTTGAAGTCAACTGGTGGCGTAAAATTGGATGAGCCTGCAATCGATTTAGCCT
TAGCGATGTCAATCGCTTCTAGTTATAAGAATACGGGGATTCCTGGCACTGATTGCTTCGTTGGTGAAGTCGGTTTGACT
GGTGAAGTTAGACGAGTAAATCGCATCGATCAACGGGTTAATGAAGCAGAAAAACTCGGTTTCAAGCGAATCTTTATTCC
TAAAAATAATCTTGGTGACTGGTCCAAAAATAATAAGATTCAAATCATCGGTGTCAGTACCGTGTCAGATGCTATGAACA
AAATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

AAA domain (AAA_25)

(58-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.254

100

0.643
  radA Streptococcus pneumoniae Rx1

64.254

100

0.643
  radA Streptococcus pneumoniae D39

64.254

100

0.643
  radA Streptococcus pneumoniae R6

64.254

100

0.643
  radA Streptococcus pneumoniae TIGR4

64.254

100

0.643
  radA Streptococcus mitis SK321

64.254

100

0.643
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.342

0.625

Multiple sequence alignment