Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GSR97_RS00810 Genome accession   NZ_CP047990
Coordinates   179853..180710 (+) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20140723005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 174853..185710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR97_RS00795 (GSR97_00860) - 175910..176935 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  GSR97_RS00800 (GSR97_00865) - 176937..177979 (+) 1043 Protein_148 ABC transporter permease -
  GSR97_RS00805 (GSR97_00870) - 178017..179843 (+) 1827 WP_029853916.1 extracellular solute-binding protein -
  GSR97_RS00810 (GSR97_00875) amiE 179853..180710 (+) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GSR97_RS00815 (GSR97_00880) - 180747..181586 (+) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GSR97_RS00820 (GSR97_00885) - 181716..182141 (+) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  GSR97_RS00825 (GSR97_00890) - 182196..183062 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GSR97_RS00830 (GSR97_00895) rph 183277..183993 (+) 717 WP_005459025.1 ribonuclease PH -
  GSR97_RS00835 (GSR97_00900) pyrE 184097..184738 (+) 642 WP_005458955.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=366807 GSR97_RS00810 WP_005496771.1 179853..180710(+) (amiE) [Vibrio parahaemolyticus strain 20140723005]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=366807 GSR97_RS00810 WP_005496771.1 179853..180710(+) (amiE) [Vibrio parahaemolyticus strain 20140723005]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCAA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATTTTGATTTGTGATGAGCCAACGAC
AGCTCTGGATGTAACGGTACAGGCGTCTATCCTTGAACTTATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361

Multiple sequence alignment