Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GSS61_RS13965 Genome accession   NZ_CP047985
Coordinates   2953949..2955178 (-) Length   409 a.a.
NCBI ID   WP_273692878.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ-52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2948949..2960178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS61_RS13935 (GSS61_14600) - 2949134..2949544 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  GSS61_RS13940 (GSS61_14605) glpG 2949604..2950446 (-) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  GSS61_RS13945 (GSS61_14610) glpE 2950446..2950766 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  GSS61_RS13950 (GSS61_14615) rpoH 2951258..2952118 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  GSS61_RS13955 (GSS61_14620) ftsX 2952294..2953262 (-) 969 WP_025527377.1 permease-like cell division protein FtsX -
  GSS61_RS13960 (GSS61_14625) ftsE 2953252..2953926 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  GSS61_RS13965 (GSS61_14630) pilA 2953949..2955178 (-) 1230 WP_273692878.1 signal recognition particle-docking protein FtsY Machinery gene
  GSS61_RS13970 (GSS61_14635) rsmD 2955402..2956001 (+) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GSS61_RS13975 (GSS61_14640) - 2956027..2956293 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  GSS61_RS13980 (GSS61_14645) - 2956346..2956930 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  GSS61_RS13985 (GSS61_14650) - 2957050..2957271 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  GSS61_RS13990 (GSS61_14655) - 2957341..2957961 (-) 621 WP_005481960.1 lysoplasmalogenase -
  GSS61_RS13995 (GSS61_14665) - 2958696..2958875 (+) 180 WP_021449827.1 hypothetical protein -
  GSS61_RS14000 (GSS61_14670) - 2958938..2959306 (-) 369 WP_005489749.1 hypothetical protein -
  GSS61_RS14005 (GSS61_14675) - 2959548..2959877 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44627.24 Da        Isoelectric Point: 4.2583

>NTDB_id=366783 GSS61_RS13965 WP_273692878.1 2953949..2955178(-) (pilA) [Vibrio parahaemolyticus strain HZ-52]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEVPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEELQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKII
NNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAA
GDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKID
DSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTARGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEF
IDALFSREE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=366783 GSS61_RS13965 WP_273692878.1 2953949..2955178(-) (pilA) [Vibrio parahaemolyticus strain HZ-52]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGTGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAGA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGAGCTACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTT
CGCTCGCCTTAAACGCAGCCTTAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGCCTGTTCAGCGGTAAAAAAA
TCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGTATGGACACCACCACAAAAATCATC
AACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGC
GGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGA
ATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCT
GGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTACAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCA
TACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATTGCCG
ATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGAT
GATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAG
TGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAGAGGCGGCGTTATTTTCGCTATCGCTG
ATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTT
ATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(206-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(125-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.806

92.176

0.45