Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GSS61_RS09395 Genome accession   NZ_CP047985
Coordinates   1987218..1987817 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain HZ-52     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982218..1992817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS61_RS09370 (GSS61_09840) - 1982324..1982983 (-) 660 WP_005397228.1 helix-turn-helix transcriptional regulator -
  GSS61_RS09375 (GSS61_09845) - 1983012..1984289 (-) 1278 WP_062851562.1 serine dehydratase subunit alpha family protein -
  GSS61_RS09380 (GSS61_09850) - 1984305..1984685 (-) 381 WP_005479566.1 RidA family protein -
  GSS61_RS09385 (GSS61_09855) - 1985003..1986262 (+) 1260 WP_062851577.1 amino acid permease -
  GSS61_RS09390 (GSS61_09860) aqpZ 1986469..1987167 (+) 699 WP_005460095.1 aquaporin Z -
  GSS61_RS09395 (GSS61_09865) recR 1987218..1987817 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GSS61_RS09400 (GSS61_09870) - 1987847..1988176 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GSS61_RS09405 (GSS61_09875) dnaX 1988259..1990394 (-) 2136 WP_025540719.1 DNA polymerase III subunit gamma/tau -
  GSS61_RS09410 (GSS61_09880) apt 1990403..1990948 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GSS61_RS09415 (GSS61_09885) - 1991114..1991461 (-) 348 WP_229650446.1 YbaN family protein -
  GSS61_RS09420 (GSS61_09890) - 1991534..1991665 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=366751 GSS61_RS09395 WP_005460088.1 1987218..1987817(-) (recR) [Vibrio parahaemolyticus strain HZ-52]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=366751 GSS61_RS09395 WP_005460088.1 1987218..1987817(-) (recR) [Vibrio parahaemolyticus strain HZ-52]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432