Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SAPIG_RS08885 Genome accession   NC_017333
Coordinates   1790812..1791414 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus subsp. aureus ST398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785812..1796414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAPIG_RS08865 (SAPIG1701) yajC 1787308..1787568 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SAPIG_RS08870 (SAPIG1702) tgt 1787587..1788726 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SAPIG_RS08875 (SAPIG1703) queA 1788749..1789774 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SAPIG_RS08880 (SAPIG1704) ruvB 1789776..1790780 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SAPIG_RS08885 (SAPIG1705) ruvA 1790812..1791414 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SAPIG_RS08890 (SAPIG1706) - 1791428..1791883 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SAPIG_RS08895 (SAPIG1707) obgE 1791896..1793188 (-) 1293 WP_000496090.1 GTPase ObgE -
  SAPIG_RS08900 (SAPIG1708) rpmA 1793675..1793959 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAPIG_RS08905 (SAPIG1709) - 1793971..1794291 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAPIG_RS08910 (SAPIG1710) rplU 1794297..1794605 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAPIG_RS08915 (SAPIG1711) mreD 1794966..1795496 (-) 531 WP_001259929.1 rod shape-determining protein MreD -
  SAPIG_RS08920 (SAPIG1712) mreC 1795496..1796338 (-) 843 WP_000911033.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=36674 SAPIG_RS08885 WP_000271547.1 1790812..1791414(-) (ruvA) [Staphylococcus aureus subsp. aureus ST398]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=36674 SAPIG_RS08885 WP_000271547.1 1790812..1791414(-) (ruvA) [Staphylococcus aureus subsp. aureus ST398]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment