Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MRUB_RS02030 Genome accession   NC_013946
Coordinates   380997..381914 (-) Length   305 a.a.
NCBI ID   WP_013012698.1    Uniprot ID   D3PMK4
Organism   Meiothermus ruber DSM 1279     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375997..386914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRUB_RS02005 (Mrub_0397) fni 377470..378492 (-) 1023 WP_013012693.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MRUB_RS02010 (Mrub_0398) - 378550..379461 (+) 912 WP_013012694.1 2-hydroxyacid dehydrogenase -
  MRUB_RS02015 (Mrub_0399) - 379451..379918 (+) 468 WP_013012695.1 hypothetical protein -
  MRUB_RS02020 (Mrub_0400) - 379922..380347 (-) 426 WP_015586316.1 disulfide bond formation protein B -
  MRUB_RS02025 (Mrub_0401) - 380353..381000 (-) 648 WP_013012697.1 hypothetical protein -
  MRUB_RS02030 (Mrub_0402) pilA 380997..381914 (-) 918 WP_013012698.1 signal recognition particle-docking protein FtsY Machinery gene
  MRUB_RS02035 (Mrub_0403) - 381979..382929 (+) 951 WP_013012699.1 L-threonylcarbamoyladenylate synthase -
  MRUB_RS02040 (Mrub_0404) - 382971..383477 (+) 507 WP_013012700.1 hypothetical protein -
  MRUB_RS02050 (Mrub_0405) - 383687..384844 (+) 1158 WP_013012701.1 class I SAM-dependent rRNA methyltransferase -
  MRUB_RS02055 (Mrub_0406) apaG 384971..385363 (+) 393 WP_013012702.1 Co2+/Mg2+ efflux protein ApaG -
  MRUB_RS02060 (Mrub_0407) - 385360..386103 (-) 744 WP_013012703.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 32551.56 Da        Isoelectric Point: 8.0341

>NTDB_id=36674 MRUB_RS02030 WP_013012698.1 380997..381914(-) (pilA) [Meiothermus ruber DSM 1279]
MSWLQRLKEGLSKTRDNLVKAIPWGEDPEAVLEELEFALIAADVGVEATQEVLEEVRQSGKKDLREALKQALTVQLEPDR
FRAKIRKAGFNPNAKKSTVEPAGKVILMVGVNGVGKTTTIAKLGQYYQSKGRSVMFCAGDTFRAAGGAQLGLWGERLGIP
VIQGPEGSDPAALAFDAASARKARGLDLLLVDTAGRLHTKHNLMEELAKVKRSIAKADPGEPGEVWLVLDAVTGQNGLEQ
AKKFHQTVGLTGVIVTKLDGTAKGGVLVPIVRTLGVPIKFIGVGEKADDLQPFDAGEFVEALLGA

Nucleotide


Download         Length: 918 bp        

>NTDB_id=36674 MRUB_RS02030 WP_013012698.1 380997..381914(-) (pilA) [Meiothermus ruber DSM 1279]
ATGAGTTGGCTGCAACGCCTCAAAGAAGGCCTGAGTAAAACCCGCGACAACCTGGTCAAAGCCATCCCCTGGGGCGAAGA
CCCCGAGGCGGTGTTGGAGGAGCTCGAGTTCGCCCTGATTGCCGCCGATGTGGGGGTGGAGGCCACCCAGGAAGTTCTGG
AGGAGGTGCGTCAGTCGGGCAAAAAAGACCTGCGCGAGGCGCTAAAGCAGGCCCTCACGGTGCAGCTCGAGCCCGACCGC
TTCCGGGCCAAAATCCGCAAGGCGGGCTTCAACCCCAACGCTAAAAAATCCACCGTGGAGCCCGCCGGCAAGGTGATTCT
GATGGTGGGGGTCAACGGGGTGGGCAAGACCACCACCATCGCCAAGCTGGGGCAGTACTACCAGAGCAAGGGCAGAAGCG
TGATGTTCTGCGCCGGCGACACCTTCCGGGCCGCGGGCGGGGCCCAGCTCGGGCTGTGGGGGGAACGGCTGGGCATCCCG
GTGATTCAGGGGCCGGAGGGTTCCGACCCCGCCGCCCTGGCCTTCGACGCGGCCTCGGCCCGCAAGGCCCGGGGCCTGGA
TCTGCTGCTGGTGGACACCGCCGGGCGGCTGCACACCAAGCACAACCTGATGGAGGAGCTGGCCAAGGTCAAGCGCTCCA
TCGCCAAGGCCGACCCCGGCGAGCCCGGTGAGGTCTGGCTGGTGCTGGACGCGGTCACGGGGCAGAACGGCCTCGAGCAG
GCCAAAAAGTTCCACCAGACCGTGGGCCTGACCGGGGTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGGGGGGTGCT
GGTGCCCATCGTGCGTACGCTGGGCGTGCCCATCAAGTTTATCGGGGTGGGCGAGAAAGCCGACGACCTGCAACCCTTCG
ACGCCGGCGAGTTTGTGGAGGCTCTGCTGGGCGCATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(104-304)

SRP54-type protein, helical bundle domain (SRP54_N)

(9-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3PMK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.045

100

0.505

Multiple sequence alignment