Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FF090_RS17610 Genome accession   NZ_CP040709
Coordinates   3745806..3747293 (-) Length   495 a.a.
NCBI ID   WP_138857974.1    Uniprot ID   A0A840RW85
Organism   Inhella inkyongensis strain IMCC1713     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3740806..3752293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF090_RS17590 - 3741532..3743208 (+) 1677 WP_175423705.1 long-chain-fatty-acid--CoA ligase -
  FF090_RS17595 - 3743293..3744015 (+) 723 WP_138857971.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  FF090_RS17600 - 3743989..3744435 (-) 447 WP_138857972.1 hypothetical protein -
  FF090_RS17605 - 3744432..3745670 (-) 1239 WP_138857973.1 class I SAM-dependent RNA methyltransferase -
  FF090_RS17610 rpoN/rpoN1 3745806..3747293 (-) 1488 WP_138857974.1 RNA polymerase factor sigma-54 Machinery gene
  FF090_RS17615 lptB 3747312..3748064 (-) 753 WP_138857975.1 LPS export ABC transporter ATP-binding protein -
  FF090_RS17620 lptA 3748150..3748758 (-) 609 WP_175423706.1 lipopolysaccharide transport periplasmic protein LptA -
  FF090_RS17625 - 3748763..3749434 (-) 672 WP_138857977.1 thiol:disulfide interchange protein DsbA/DsbL -
  FF090_RS17630 - 3749439..3750101 (-) 663 WP_138857978.1 thiol:disulfide interchange protein DsbA/DsbL -
  FF090_RS17635 - 3750098..3750766 (-) 669 WP_138857979.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54750.84 Da        Isoelectric Point: 4.6655

>NTDB_id=366718 FF090_RS17610 WP_138857974.1 3745806..3747293(-) (rpoN/rpoN1) [Inhella inkyongensis strain IMCC1713]
MKPSLQLRQSQHLALTPQLQQSIRLLQLSTLELQQEVEQMLDSNPLLELDADEDLPLPGADSVSQVVAETREERIEAAGE
GGDEVRELQADDFGTTEHEDWANGTEGDDFDGIRELPALGNAVDDDESPRGEAQSAATSLTEHLLGQLIGHALSDLDRDA
VLLLIGSLNADGYLADELEALADDLAAKHTEPREELLDSLRMALALVQSLDPAGVGARDLSECLLLQLREQAAHPQCELA
TKVCAKHLELLARRDWRRLALLTHSDEPQLRLALALIARLEPKPGRAFGESDNTPVVPDVIVRRQGRQWVAQINPEVCPK
LRVNELYARLLKNHRGSSLAGPLQEARWFIKNIQQRFDTIQRVSQAIVERQDGFFNHGELAMRPLVLREIAEELGLHEST
ISRVTTAKYMATPHGTFELKYFFGSGLNTEAGGEASSTAVRALIRQFIDAESKKKPLSDSALAAMLEEQGIQCARRTVAK
YREGMKIPTAPLRKE

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=366718 FF090_RS17610 WP_138857974.1 3745806..3747293(-) (rpoN/rpoN1) [Inhella inkyongensis strain IMCC1713]
GTGAAGCCCAGCCTTCAGCTACGCCAGAGTCAGCACCTGGCGCTGACCCCGCAACTGCAGCAATCCATCCGGCTGCTGCA
GCTCTCCACGCTGGAGCTGCAGCAGGAGGTCGAGCAGATGCTCGACAGCAACCCCCTGCTGGAGCTGGACGCCGATGAGG
ACCTGCCGCTGCCGGGGGCCGATAGCGTGTCCCAGGTCGTGGCCGAGACCCGCGAGGAGCGCATCGAGGCCGCGGGTGAG
GGCGGTGACGAGGTGCGAGAACTGCAGGCCGACGACTTCGGTACGACCGAGCACGAGGACTGGGCCAACGGCACCGAAGG
CGACGATTTCGATGGCATCCGTGAGCTGCCGGCGCTGGGCAACGCGGTTGATGACGACGAGAGCCCTCGCGGCGAGGCCC
AGAGTGCAGCCACCAGCCTGACCGAGCATTTGCTTGGACAGCTGATCGGCCATGCGCTGAGTGACCTGGATCGCGATGCC
GTGTTGTTGCTGATCGGTAGCTTGAACGCCGATGGCTATTTGGCCGACGAACTGGAGGCCCTGGCTGACGATTTGGCCGC
CAAGCACACCGAGCCGCGCGAGGAGTTGCTGGATAGCCTGCGCATGGCCCTGGCCTTGGTGCAAAGCCTGGACCCCGCCG
GCGTGGGCGCGCGCGACCTCAGCGAGTGCTTGCTGCTGCAGCTGCGCGAACAGGCGGCGCACCCGCAGTGCGAATTGGCC
ACCAAGGTGTGCGCCAAGCACCTGGAGTTGCTTGCCCGGCGCGACTGGCGTCGCCTGGCCCTGCTGACGCACAGCGACGA
GCCCCAGTTGCGCCTGGCCCTGGCCTTGATCGCCCGCCTGGAACCCAAGCCCGGGCGCGCCTTTGGCGAGAGCGACAACA
CCCCGGTGGTGCCCGATGTGATCGTGCGCCGCCAGGGGCGGCAGTGGGTGGCGCAGATCAACCCCGAGGTCTGCCCCAAG
CTGCGCGTCAACGAGTTGTATGCGCGGCTGCTGAAGAATCATCGCGGCTCCAGCCTGGCCGGGCCGCTGCAGGAGGCGCG
CTGGTTCATCAAGAACATCCAGCAACGCTTCGACACCATCCAGCGTGTCTCGCAGGCTATCGTCGAGCGCCAGGACGGCT
TCTTCAACCATGGCGAGCTGGCCATGCGCCCCTTGGTGCTGCGCGAGATCGCCGAAGAGCTTGGCCTGCACGAGTCCACC
ATCTCGCGCGTCACCACCGCCAAATACATGGCCACGCCGCACGGCACCTTCGAGCTGAAGTATTTCTTCGGCTCCGGTCT
GAATACCGAGGCTGGCGGCGAGGCCAGCAGCACCGCCGTGCGGGCGCTGATCCGCCAATTCATCGACGCCGAAAGCAAGA
AGAAGCCGCTGTCCGACTCGGCGCTGGCCGCCATGCTGGAAGAGCAGGGCATCCAATGCGCCCGTCGCACCGTGGCCAAG
TACCGCGAGGGGATGAAGATCCCCACCGCCCCTCTACGAAAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-327)

Sigma-54, DNA binding domain (Sigma54_DBD)

(342-494)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A840RW85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.737

100

0.541

Multiple sequence alignment