Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FF090_RS02020 Genome accession   NZ_CP040709
Coordinates   401089..402450 (+) Length   453 a.a.
NCBI ID   WP_138855140.1    Uniprot ID   -
Organism   Inhella inkyongensis strain IMCC1713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 396089..407450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF090_RS02000 - 396635..398859 (+) 2225 Protein_404 peptidase domain-containing ABC transporter -
  FF090_RS02005 - 398753..399634 (-) 882 WP_138855137.1 DMT family transporter -
  FF090_RS02010 - 399646..400281 (-) 636 WP_138855138.1 LysE family transporter -
  FF090_RS02015 - 400440..401066 (+) 627 WP_138855139.1 cation transporter -
  FF090_RS02020 radA 401089..402450 (+) 1362 WP_138855140.1 DNA repair protein RadA Machinery gene
  FF090_RS02025 - 402447..402764 (+) 318 WP_138855141.1 antibiotic biosynthesis monooxygenase -
  FF090_RS02030 - 402799..402999 (+) 201 WP_138855142.1 zinc-finger domain-containing protein -
  FF090_RS02035 - 403002..403448 (+) 447 WP_138855143.1 SgcJ/EcaC family oxidoreductase -
  FF090_RS02040 - 403463..404455 (+) 993 WP_138855144.1 YheT family hydrolase -
  FF090_RS02045 - 404448..404957 (+) 510 WP_138855145.1 DUF2946 family protein -
  FF090_RS02050 - 405013..405540 (-) 528 WP_138855146.1 cytochrome c5 family protein -
  FF090_RS02060 - 405766..406908 (-) 1143 WP_138855147.1 porin -
  FF090_RS02065 - 406921..407292 (-) 372 WP_217503017.1 phosphate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47464.80 Da        Isoelectric Point: 7.6036

>NTDB_id=366703 FF090_RS02020 WP_138855140.1 401089..402450(+) (radA) [Inhella inkyongensis strain IMCC1713]
MAKEKTIYTCSECGATSAKWLGRCPGCEAWNSLIEGVAEPSGGAKNHRFQSLAKASPVATLSEIEAVDTARTPTGIDELD
RVLGGGIVAGGVTLIGGDPGVGKSTLLLQALDALSRGLKVLYVTGEESGAQVAMRARRLGLPGTAVRVLAEINLERILAT
LAAEQPAFCVIDSIQTVYTEQLTSAPGSVAQVRECAALLTRAAKSSGCSMVLVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSAHTEPVPGSCVLVTLEGTRPLLVELQALVDSGGARR
LSVGLERDRLAMLLAVLHRHAGVATNDQDVFVNAVGGVRISEPAADLAVLLAIQSSLRGRPLPRGFLAFGEVGLAGEVRP
APRGQERLKEAAKLGFSVAVIPKANAPKKPIEGLTVHAVERIEEAMDCVRSLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=366703 FF090_RS02020 WP_138855140.1 401089..402450(+) (radA) [Inhella inkyongensis strain IMCC1713]
ATGGCCAAAGAAAAGACGATCTACACCTGCAGCGAATGCGGCGCCACCAGCGCCAAGTGGCTGGGCCGCTGCCCCGGCTG
CGAGGCCTGGAACAGCCTGATCGAGGGCGTGGCTGAGCCCAGCGGCGGGGCGAAGAACCATCGCTTCCAGTCCCTGGCCA
AGGCCAGCCCGGTGGCCACGCTGAGCGAGATCGAGGCGGTGGACACCGCGCGAACGCCCACGGGCATCGATGAACTGGAT
CGCGTGCTGGGTGGTGGCATCGTGGCCGGGGGCGTCACCTTGATCGGCGGCGATCCGGGGGTGGGCAAGAGCACCTTGCT
GCTGCAGGCGCTCGATGCGCTGAGCCGAGGGCTGAAAGTGCTTTACGTCACCGGCGAGGAGTCCGGCGCCCAGGTGGCGA
TGCGGGCGCGCCGGCTGGGTCTGCCGGGCACTGCGGTGCGGGTGCTGGCCGAGATCAACCTGGAGCGCATCCTCGCCACC
TTGGCCGCCGAGCAGCCGGCCTTCTGTGTGATCGACTCCATCCAGACCGTCTACACCGAGCAACTCACCAGTGCGCCGGG
CTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCTGCTGACGCGCGCGGCCAAGAGCAGCGGCTGCTCCATGGTGCTGGTGG
GCCATGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGTGTGCTGGAGCACATCGTCGACACCGTGCTGTACTTTGAGGGC
GACACGCATTCCAGCTTTCGCCTGGTGCGGGCGATCAAGAACCGCTTTGGTGCGGTCAATGAGATCGGCGTGTTCGCGAT
GACCGAAAAGGGCCTCAAGGGCGTGAGCAACCCCTCGGCCATCTTCCTGAGCGCGCACACCGAGCCGGTGCCCGGCAGTT
GCGTGCTGGTGACCCTGGAGGGCACGCGCCCGTTGCTGGTGGAGTTGCAGGCCTTGGTGGACAGCGGGGGCGCGCGCCGG
CTCTCGGTGGGCCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCATGCCGGCGTGGCCACCAATGA
TCAGGACGTGTTCGTGAACGCCGTGGGCGGGGTGCGCATCAGCGAGCCGGCGGCGGACCTGGCGGTGCTGCTGGCCATCC
AGAGTTCATTGCGCGGCCGGCCCTTGCCGCGTGGTTTCCTGGCCTTTGGCGAGGTGGGCCTGGCCGGCGAGGTGCGGCCC
GCGCCGCGCGGCCAGGAGCGCCTGAAAGAAGCCGCCAAGCTCGGGTTCAGCGTGGCCGTGATCCCCAAGGCCAATGCGCC
GAAGAAGCCCATCGAGGGCCTGACCGTGCATGCGGTCGAGCGCATCGAAGAGGCGATGGACTGTGTGCGGAGCTTGCAAT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.026

100

0.483
  radA Streptococcus mitis SK321

45.815

100

0.459
  radA Streptococcus mitis NCTC 12261

45.434

99.117

0.45
  radA Streptococcus pneumoniae TIGR4

47.183

94.04

0.444
  radA Streptococcus pneumoniae D39

47.183

94.04

0.444
  radA Streptococcus pneumoniae Rx1

47.183

94.04

0.444
  radA Streptococcus pneumoniae R6

47.183

94.04

0.444

Multiple sequence alignment