Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GWK28_RS09825 Genome accession   NZ_CP047973
Coordinates   2064061..2064696 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2059061..2069696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS09800 (GWK28_09815) - 2059116..2060096 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  GWK28_RS09805 (GWK28_09820) kdsB 2060108..2060869 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GWK28_RS09810 (GWK28_09825) lpxK 2060880..2061890 (-) 1011 WP_000050451.1 tetraacyldisaccharide 4'-kinase -
  GWK28_RS09815 (GWK28_09830) msbA 2061893..2063620 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  GWK28_RS09820 (GWK28_09835) - 2063617..2064045 (-) 429 WP_000669680.1 biopolymer transporter ExbD -
  GWK28_RS09825 (GWK28_09840) exbB 2064061..2064696 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GWK28_RS09830 (GWK28_09845) - 2064746..2065633 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  GWK28_RS09835 (GWK28_09850) - 2065630..2066412 (-) 783 WP_000057212.1 ParA family protein -
  GWK28_RS09840 (GWK28_09855) rsmG 2066434..2067066 (-) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GWK28_RS09845 (GWK28_09860) murU 2067154..2067843 (-) 690 WP_004738901.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GWK28_RS09850 (GWK28_09865) - 2067843..2068856 (-) 1014 WP_032014549.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=366677 GWK28_RS09825 WP_000264042.1 2064061..2064696(-) (exbB) [Acinetobacter baumannii strain DETAB-P2]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=366677 GWK28_RS09825 WP_000264042.1 2064061..2064696(-) (exbB) [Acinetobacter baumannii strain DETAB-P2]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment