Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FGE20_RS04300 Genome accession   NZ_CP040694
Coordinates   952904..954016 (-) Length   370 a.a.
NCBI ID   WP_138981892.1    Uniprot ID   A0A5B7UDA8
Organism   Elizabethkingia sp. JS20170427COW     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 947904..959016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE20_RS04280 (FGE20_04280) - 948033..949136 (-) 1104 WP_138981889.1 glycosyltransferase -
  FGE20_RS04285 (FGE20_04285) - 949331..951871 (+) 2541 WP_138981890.1 ATP-dependent Clp protease ATP-binding subunit -
  FGE20_RS04290 (FGE20_04290) - 951912..952301 (-) 390 WP_138981891.1 group III truncated hemoglobin -
  FGE20_RS04295 (FGE20_04295) - 952416..952907 (+) 492 WP_138983344.1 YkgJ family cysteine cluster protein -
  FGE20_RS04300 (FGE20_04300) dprA 952904..954016 (-) 1113 WP_138981892.1 DNA-processing protein DprA Machinery gene
  FGE20_RS04305 (FGE20_04305) - 954045..954785 (-) 741 WP_138983345.1 rhomboid family intramembrane serine protease -
  FGE20_RS04310 (FGE20_04310) - 954964..956112 (+) 1149 WP_138981893.1 DUF3078 domain-containing protein -
  FGE20_RS04315 (FGE20_04315) - 956113..957645 (-) 1533 WP_138981894.1 YifB family Mg chelatase-like AAA ATPase -
  FGE20_RS04320 (FGE20_04320) - 957812..958696 (+) 885 WP_138981895.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 41509.72 Da        Isoelectric Point: 6.7471

>NTDB_id=366558 FGE20_RS04300 WP_138981892.1 952904..954016(-) (dprA) [Elizabethkingia sp. JS20170427COW]
MSSEELIYAMALRSCPMIGDSTFRKMLAIAGSAKEAWELSGKELSKIRKIRKSVTESLGNPVYLEKAIQEIEFCEKNNIK
IIYALQEKLPGLLSECEDAPVFLFQKGNFDREKNNISIVGTRNITSYGRKFVHGFLEAAKEKSIQTISGLALGVDTCVHE
ESLHFQIPTVAVIAHGFHLEIYPAKNRKLAEKILENQGAIFSEYSSQQSFIKENFIQRNRIVAGISPSTCIVETAFRGGA
ISTATFANNYNREVYALPGDINHKYSQGCNLLIAQNKASAIVDIAKLITDLGFQQTKEKQLDLFEDFKDYSKLDKDQKSV
IEVIIKTPGIQLEELSEEIGIASYRLLPILLTLELETYIKTNSSKQYFPI

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=366558 FGE20_RS04300 WP_138981892.1 952904..954016(-) (dprA) [Elizabethkingia sp. JS20170427COW]
ATGTCTTCCGAGGAACTAATATATGCTATGGCTTTAAGGAGTTGTCCTATGATAGGCGACTCTACTTTTAGGAAAATGCT
GGCTATAGCAGGTTCTGCAAAGGAAGCATGGGAACTTTCTGGAAAGGAACTCTCGAAAATTCGGAAAATCCGAAAATCGG
TTACCGAAAGCTTAGGAAATCCCGTTTATTTGGAAAAAGCAATTCAGGAAATAGAGTTTTGTGAGAAGAACAATATTAAG
ATTATTTATGCGCTCCAAGAGAAATTACCAGGCCTTCTTTCTGAATGTGAAGATGCTCCCGTCTTTTTATTTCAAAAAGG
GAATTTCGATAGAGAGAAGAATAATATTAGTATTGTAGGTACCCGTAACATTACTTCTTATGGACGAAAATTTGTACATG
GTTTTTTGGAAGCTGCAAAAGAAAAGTCTATACAAACGATAAGTGGTTTGGCTTTGGGAGTAGATACTTGCGTTCATGAA
GAGTCTTTACATTTCCAAATTCCTACTGTAGCAGTTATTGCACATGGTTTTCATTTAGAAATTTATCCTGCTAAGAATAG
AAAACTGGCTGAAAAAATATTGGAAAATCAAGGAGCCATTTTTTCGGAATACTCTTCTCAACAATCTTTTATAAAGGAAA
ATTTTATACAAAGGAACCGTATTGTTGCAGGAATTTCTCCTTCAACATGCATTGTTGAAACCGCTTTTAGAGGAGGGGCT
ATCAGTACAGCAACGTTTGCTAATAATTATAATAGAGAAGTATATGCCCTACCAGGGGATATCAATCATAAGTACAGCCA
AGGTTGTAACTTACTTATTGCTCAAAATAAGGCAAGTGCCATAGTGGATATCGCCAAACTCATTACAGATTTAGGATTCC
AACAAACTAAAGAGAAACAACTGGATTTATTCGAAGATTTTAAAGATTATTCTAAATTGGATAAAGACCAAAAATCTGTA
ATAGAAGTGATTATAAAAACACCGGGAATACAATTAGAAGAACTTTCTGAGGAAATAGGAATAGCAAGTTATAGATTACT
ACCCATCCTATTAACCTTAGAACTGGAAACATATATTAAAACCAATTCCTCAAAACAATATTTTCCTATTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7UDA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

48.774

99.189

0.484

Multiple sequence alignment