Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FGE20_RS03005 Genome accession   NZ_CP040694
Coordinates   679904..680551 (+) Length   215 a.a.
NCBI ID   WP_138981664.1    Uniprot ID   A0A5B7UG61
Organism   Elizabethkingia sp. JS20170427COW     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674904..685551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE20_RS12270 - 675039..675596 (+) 558 WP_255577435.1 DUF5690 family protein -
  FGE20_RS12275 - 675623..675811 (+) 189 WP_255577436.1 hypothetical protein -
  FGE20_RS02985 (FGE20_02985) - 675790..676950 (+) 1161 Protein_587 TIGR03364 family FAD-dependent oxidoreductase -
  FGE20_RS02990 (FGE20_02990) - 676964..677644 (+) 681 WP_138981661.1 phosphonatase-like hydrolase -
  FGE20_RS02995 (FGE20_02995) - 678042..678686 (+) 645 WP_138981662.1 HAD family phosphatase -
  FGE20_RS03000 (FGE20_03000) - 679205..679666 (+) 462 WP_138981663.1 hypothetical protein -
  FGE20_RS12280 - 679695..679820 (+) 126 WP_255577437.1 hypothetical protein -
  FGE20_RS03005 (FGE20_03005) comF 679904..680551 (+) 648 WP_138981664.1 ComF family protein Machinery gene
  FGE20_RS03010 (FGE20_03010) upp 680548..681198 (-) 651 WP_138981665.1 uracil phosphoribosyltransferase -
  FGE20_RS03015 (FGE20_03015) - 681236..682237 (-) 1002 WP_138981666.1 acyl transferase -
  FGE20_RS03020 (FGE20_03020) - 682239..683003 (-) 765 WP_138983333.1 UDP-2,3-diacylglucosamine diphosphatase -
  FGE20_RS03025 (FGE20_03025) - 683016..683462 (-) 447 WP_138981667.1 6-carboxytetrahydropterin synthase -
  FGE20_RS03030 (FGE20_03030) - 683586..684566 (+) 981 WP_138981668.1 deoxyhypusine synthase family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24999.05 Da        Isoelectric Point: 9.4145

>NTDB_id=366554 FGE20_RS03005 WP_138981664.1 679904..680551(+) (comF) [Elizabethkingia sp. JS20170427COW]
MNLLDILFPNRCLSCNTIITGDGLICEKCYSKVNFTHWEHLSPNPLEKRLALFFNIQHAYALMNFEKKGLSQKIIHQLKY
GKRENIGKTLAFWCYERIHLKPSIDYLVTVPLHPSKLKKRGYNQLHLFADTLSQLWNIPHFKNFLTRETFNSAQAQKDRV
HREQNKVQFQLNSEIKNKHILLIDDVCTTGGTLSSCAWELIKNQNTVSVLVMAID

Nucleotide


Download         Length: 648 bp        

>NTDB_id=366554 FGE20_RS03005 WP_138981664.1 679904..680551(+) (comF) [Elizabethkingia sp. JS20170427COW]
ATGAACCTATTAGACATCCTCTTCCCTAACCGATGCTTATCCTGTAACACGATTATTACAGGAGATGGATTAATCTGCGA
GAAATGTTATTCAAAGGTTAATTTCACTCACTGGGAGCACCTCTCACCTAATCCTTTGGAAAAAAGGCTGGCTTTATTTT
TTAACATCCAACACGCTTATGCTCTCATGAATTTTGAAAAAAAAGGACTCAGCCAAAAAATAATCCACCAACTAAAATAC
GGAAAAAGAGAAAACATTGGGAAAACGCTTGCCTTTTGGTGTTATGAAAGAATACATCTAAAACCCTCCATCGATTATTT
GGTAACCGTTCCGCTACATCCTAGTAAATTAAAAAAGAGAGGATATAATCAATTGCATTTATTTGCGGATACTCTCTCCC
AATTATGGAATATCCCTCATTTCAAAAATTTTCTTACTCGGGAAACATTTAATTCTGCACAAGCACAAAAAGACAGGGTA
CACCGAGAACAAAACAAAGTTCAATTTCAGTTAAATTCGGAAATTAAAAATAAACATATTCTGCTTATTGATGATGTTTG
CACTACAGGAGGGACTTTATCTTCTTGTGCCTGGGAGTTAATAAAAAACCAAAACACGGTAAGCGTTTTGGTTATGGCTA
TTGATTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7UG61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.372

100

0.484

Multiple sequence alignment