Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IXO1088_RS08385 Genome accession   NZ_CP040687
Coordinates   1820217..1820618 (+) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas oryzae pv. oryzae strain IXO1088     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815217..1825618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO1088_RS08365 (IXO1088_008855) tsaB 1816219..1816938 (+) 720 WP_012445327.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  IXO1088_RS08370 (IXO1088_008860) - 1816901..1817851 (+) 951 WP_044757457.1 ADP-ribosylglycohydrolase family protein -
  IXO1088_RS08375 (IXO1088_008865) - 1818145..1819020 (-) 876 WP_011258506.1 TonB family protein -
  IXO1088_RS08380 (IXO1088_008870) gshB 1819017..1819967 (-) 951 WP_011408182.1 glutathione synthase -
  IXO1088_RS08385 (IXO1088_008875) pilG 1820217..1820618 (+) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  IXO1088_RS08390 (IXO1088_008880) - 1820636..1820998 (+) 363 WP_011258508.1 response regulator -
  IXO1088_RS08395 (IXO1088_008885) - 1820998..1821528 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  IXO1088_RS08400 (IXO1088_008890) - 1821568..1823604 (+) 2037 WP_011258510.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=366522 IXO1088_RS08385 WP_005913706.1 1820217..1820618(+) (pilG) [Xanthomonas oryzae pv. oryzae strain IXO1088]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=366522 IXO1088_RS08385 WP_005913706.1 1820217..1820618(+) (pilG) [Xanthomonas oryzae pv. oryzae strain IXO1088]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTCAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment