Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SAPIG_RS06675 Genome accession   NC_017333
Coordinates   1347932..1349083 (+) Length   383 a.a.
NCBI ID   WP_000020355.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST398     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1342932..1354083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAPIG_RS06650 (SAPIG1281) yfmH 1343762..1345048 (+) 1287 WP_000664762.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SAPIG_RS06655 (SAPIG1282) ymfI 1345048..1345752 (+) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  SAPIG_RS06660 (SAPIG1283) - 1345857..1346684 (+) 828 WP_000214890.1 YmfK family protein -
  SAPIG_RS06665 (SAPIG1284) - 1346703..1347095 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  SAPIG_RS06670 (SAPIG1285) pgsA 1347129..1347707 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SAPIG_RS06675 (SAPIG1286) cinA 1347932..1349083 (+) 1152 WP_000020355.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SAPIG_RS06680 (SAPIG1287) recA 1349248..1350291 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  SAPIG_RS06685 (SAPIG1288) rny 1350645..1352204 (+) 1560 WP_001050913.1 ribonuclease Y -
  SAPIG_RS06690 (SAPIG1289) - 1352501..1352716 (-) 216 WP_000026308.1 hypothetical protein -
  SAPIG_RS06695 (SAPIG1290) - 1352890..1353687 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43166.44 Da        Isoelectric Point: 6.0928

>NTDB_id=36649 SAPIG_RS06675 WP_000020355.1 1347932..1349083(+) (cinA) [Staphylococcus aureus subsp. aureus ST398]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=36649 SAPIG_RS06675 WP_000020355.1 1347932..1349083(+) (cinA) [Staphylococcus aureus subsp. aureus ST398]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment