Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FED52_RS05955 Genome accession   NZ_CP040676
Coordinates   1078887..1080584 (+) Length   565 a.a.
NCBI ID   WP_138859275.1    Uniprot ID   -
Organism   Exiguobacterium mexicanum strain A-EM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073887..1085584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED52_RS05930 xseB 1074335..1074565 (+) 231 WP_034777980.1 exodeoxyribonuclease VII small subunit -
  FED52_RS05935 - 1074562..1075440 (+) 879 WP_138859273.1 polyprenyl synthetase family protein -
  FED52_RS05940 dxs 1075564..1077456 (+) 1893 WP_205729362.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FED52_RS05945 - 1077463..1078284 (+) 822 WP_034777976.1 TlyA family RNA methyltransferase -
  FED52_RS05950 argR 1078424..1078873 (+) 450 WP_021067696.1 transcriptional regulator ArgR -
  FED52_RS05955 recN 1078887..1080584 (+) 1698 WP_138859275.1 DNA repair protein RecN Machinery gene
  FED52_RS05960 spo0A 1080585..1081316 (+) 732 WP_138859276.1 sporulation transcription factor Spo0A -
  FED52_RS05965 - 1081929..1082177 (-) 249 WP_034777970.1 DUF2627 family protein -
  FED52_RS05970 - 1082308..1083945 (+) 1638 WP_138859277.1 sigma 54-interacting transcriptional regulator -
  FED52_RS05975 yqiS 1084068..1084964 (+) 897 WP_138859278.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63401.32 Da        Isoelectric Point: 4.7313

>NTDB_id=366416 FED52_RS05955 WP_138859275.1 1078887..1080584(+) (recN) [Exiguobacterium mexicanum strain A-EM]
MLAELSIKQFAIIDELNITFKRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFIVEPDHPILEAA
TQYGIEIEEGTVILRRDLHSSGKSVCRVNGKMMPLSTLRELGRLLVDIHGQHEHQHLMDAEYHLGILDSFAESELAPLLE
RYREAYVDWKNVADELKRLSQSEQELAQRMDLLAFQTNEIEAAELKVGEEQALTEERNELANFERIHQHVRLSYEAVADE
AKGLDQIGIAMREMEEASALSTSLAPMAETISNAYFLLEDAKFQLRDQLDSLEFDPIRLDEIETRLALFQQLKRKYGATI
DEVITYGEKIADELKSMTNREEHLQELSDRLAQLEQKVRTSGLTLSAARKQAATELEKAIQRELKELYMEKTQFEVRFKE
GLFKADGLDQVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETDDRTKTNVSTLGHAERVDELGRMIAGAQMTDLTKQHVEELLTMSLQLKRKF
IEGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=366416 FED52_RS05955 WP_138859275.1 1078887..1080584(+) (recN) [Exiguobacterium mexicanum strain A-EM]
ATGTTAGCAGAACTATCGATCAAACAATTTGCGATCATCGATGAACTGAATATCACGTTCAAACGTGGGATGACCGTATT
GACAGGGGAGACCGGGGCCGGGAAGTCAATCTTACTCGACGCCATCGGTTTGCTCGTCGGGGGACGCGGCTCGAGCGAGT
TCGTCCGTTACGGTCAAGACAAGGCGGAGATCGAAGGGCTGTTCATCGTCGAACCGGACCACCCGATCCTCGAGGCGGCG
ACCCAATACGGGATCGAGATCGAAGAAGGGACCGTCATTTTACGCCGCGACTTACATAGCAGCGGAAAGAGCGTATGCCG
GGTCAACGGCAAGATGATGCCGCTATCGACGCTACGCGAACTCGGCCGACTGCTCGTCGATATCCATGGCCAGCACGAGC
ATCAGCACTTGATGGATGCCGAGTACCATCTCGGTATTTTGGACAGCTTTGCTGAATCCGAGCTCGCCCCGCTCCTCGAG
CGATATCGCGAGGCTTACGTCGATTGGAAAAACGTCGCCGATGAGTTGAAACGGTTGAGTCAAAGTGAACAAGAGTTGGC
CCAACGCATGGACTTGCTCGCGTTCCAGACGAATGAGATCGAGGCGGCCGAGCTGAAAGTCGGTGAAGAACAGGCGCTCA
CGGAGGAACGGAACGAGCTCGCCAACTTCGAGCGGATTCATCAGCACGTCCGGTTATCGTATGAGGCGGTCGCGGATGAG
GCGAAAGGGCTCGACCAGATCGGCATCGCCATGCGCGAGATGGAGGAAGCCTCCGCATTGTCGACATCGCTCGCGCCGAT
GGCCGAGACGATCTCGAACGCTTACTTCTTGCTCGAAGACGCGAAATTTCAGTTGCGTGACCAGCTCGACTCGCTCGAAT
TCGATCCGATCCGGCTCGATGAGATCGAGACGCGGCTCGCTTTGTTCCAACAGCTGAAGCGGAAATACGGTGCCACGATC
GACGAGGTCATCACGTACGGCGAAAAAATTGCCGATGAGTTAAAATCGATGACGAATCGGGAAGAACATTTGCAAGAACT
ATCGGACCGGCTCGCCCAGCTCGAACAAAAAGTACGTACGTCCGGGCTGACGCTATCGGCGGCCCGTAAACAAGCGGCTA
CCGAGCTCGAGAAGGCGATTCAGCGTGAATTGAAAGAATTATATATGGAGAAGACCCAGTTCGAAGTTCGGTTCAAAGAA
GGACTGTTCAAGGCGGACGGGCTCGATCAAGTCGAATTCTATATGATGACGAACGTCGGGGAGCCTTTCAAGCCGCTCGC
CAAAGTGGCCTCCGGCGGAGAATTGTCCCGCGTCATGCTCGCCTTGAAGTCGATTTTCTCGCGAACGGTCGGCGTCGCGT
CGATCATTTTCGATGAAGTGGACACGGGTGTCTCGGGGCGGGTCGCCCAAGCGATGGGTGAGAAGATCTTCCGTCTGTCG
GTCGGCTCACAAGTGCTCTGTATCACCCATTTGGCTCAAGTGGCCGCCATGGCAGATCAGCACTTGTACATCACGAAGAC
GGAGACGGATGATCGCACGAAGACGAACGTCTCCACGCTTGGTCATGCCGAACGAGTCGATGAGCTCGGGCGCATGATCG
CCGGGGCGCAGATGACGGATTTGACGAAACAACATGTGGAGGAACTGCTCACTATGTCTCTCCAATTAAAACGGAAGTTT
ATCGAAGGGGTGTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.547

Multiple sequence alignment