Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GV831_RS07295 Genome accession   NZ_CP047891
Coordinates   1498510..1499226 (+) Length   238 a.a.
NCBI ID   WP_003131538.1    Uniprot ID   Q9CID8
Organism   Lactococcus lactis subsp. lactis strain WHH2311     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493510..1504226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV831_RS07280 (GV831_07245) - 1493835..1496144 (-) 2310 WP_003131533.1 glycoside hydrolase family 65 protein -
  GV831_RS07285 (GV831_07250) - 1496212..1497777 (-) 1566 WP_014570385.1 PTS transporter subunit EIIC -
  GV831_RS07290 (GV831_07255) - 1497914..1498399 (-) 486 WP_003131536.1 PTS glucose transporter subunit IIA -
  GV831_RS07295 (GV831_07260) treR 1498510..1499226 (+) 717 WP_003131538.1 trehalose operon repressor Regulator
  GV831_RS07300 (GV831_07265) glmM 1499302..1500660 (-) 1359 WP_003131539.1 phosphoglucosamine mutase -
  GV831_RS07305 (GV831_07270) - 1500706..1501665 (-) 960 WP_032398758.1 YbbR-like domain-containing protein -
  GV831_RS07310 (GV831_07275) cdaA 1501655..1502533 (-) 879 WP_003131542.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27865.52 Da        Isoelectric Point: 6.4168

>NTDB_id=366408 GV831_RS07295 WP_003131538.1 1498510..1499226(+) (treR) [Lactococcus lactis subsp. lactis strain WHH2311]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=366408 GV831_RS07295 WP_003131538.1 1498510..1499226(+) (treR) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CID8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462