Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   FGE23_RS19960 Genome accession   NZ_CP040672
Coordinates   1343095..1343259 (+) Length   54 a.a.
NCBI ID   WP_269195014.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 1338095..1348259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS19955 srfAB 1340037..1343030 (+) 2994 Protein_1305 surfactin non-ribosomal peptide synthetase SrfAB -
  FGE23_RS19960 comS 1343095..1343259 (+) 165 WP_269195014.1 competence protein ComS Regulator
  FGE23_RS20265 - 1343205..1344377 (+) 1173 Protein_1307 condensation domain-containing protein -

Sequence


Protein


Download         Length: 54 a.a.        Molecular weight: 6238.22 Da        Isoelectric Point: 11.7559

>NTDB_id=366403 FGE23_RS19960 WP_269195014.1 1343095..1343259(+) (comS) [Bacillus amyloliquefaciens strain X030]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=366403 FGE23_RS19960 WP_269195014.1 1343095..1343259(+) (comS) [Bacillus amyloliquefaciens strain X030]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains


Predicted by InterproScan.

(9-52)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5


Multiple sequence alignment