Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FGE23_RS18130 Genome accession   NZ_CP040672
Coordinates   3655376..3656128 (-) Length   250 a.a.
NCBI ID   WP_070082169.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3650376..3661128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS18105 mreC 3650812..3651675 (-) 864 WP_146277257.1 rod shape-determining protein MreC -
  FGE23_RS18110 mreB 3651706..3652719 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  FGE23_RS18115 radC 3652811..3653506 (-) 696 WP_007408165.1 DNA repair protein RadC -
  FGE23_RS18120 - 3653538..3654107 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  FGE23_RS18125 - 3654248..3655249 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  FGE23_RS18130 comC 3655376..3656128 (-) 753 WP_070082169.1 A24 family peptidase Machinery gene
  FGE23_RS18135 - 3656268..3657560 (-) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FGE23_RS18140 - 3657619..3660261 (-) 2643 WP_060674740.1 valine--tRNA ligase -
  FGE23_RS18145 - 3660714..3660905 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27106.78 Da        Isoelectric Point: 9.2521

>NTDB_id=366398 FGE23_RS18130 WP_070082169.1 3655376..3656128(-) (comC) [Bacillus amyloliquefaciens strain X030]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=366398 FGE23_RS18130 WP_070082169.1 3655376..3656128(-) (comC) [Bacillus amyloliquefaciens strain X030]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGATTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment