Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FGE23_RS17285 Genome accession   NZ_CP040672
Coordinates   3503695..3504462 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3498695..3509462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS17265 - 3498897..3499709 (-) 813 WP_146277181.1 pyruvate, water dikinase regulatory protein -
  FGE23_RS17270 ccpN 3499735..3500373 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  FGE23_RS17275 glyS 3500474..3502513 (-) 2040 WP_146277183.1 glycine--tRNA ligase subunit beta -
  FGE23_RS17280 glyQ 3502506..3503393 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  FGE23_RS17285 recO 3503695..3504462 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  FGE23_RS17290 - 3504499..3504642 (-) 144 WP_007408286.1 YqzL family protein -
  FGE23_RS17295 era 3504798..3505703 (-) 906 WP_007408285.1 GTPase Era -
  FGE23_RS17300 - 3505684..3506094 (-) 411 WP_003152976.1 cytidine deaminase -
  FGE23_RS17305 - 3506218..3506592 (-) 375 WP_038461537.1 diacylglycerol kinase family protein -
  FGE23_RS17310 ybeY 3506573..3507046 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  FGE23_RS17315 - 3507047..3509179 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=366391 FGE23_RS17285 WP_003152982.1 3503695..3504462(-) (recO) [Bacillus amyloliquefaciens strain X030]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=366391 FGE23_RS17285 WP_003152982.1 3503695..3504462(-) (recO) [Bacillus amyloliquefaciens strain X030]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTTGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment