Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GV831_RS03695 Genome accession   NZ_CP047891
Coordinates   770608..771843 (-) Length   411 a.a.
NCBI ID   WP_014570582.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WHH2311     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 765608..776843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV831_RS03665 (GV831_03635) - 765619..766902 (-) 1284 WP_003132113.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GV831_RS03670 (GV831_03640) - 766921..767418 (-) 498 WP_003132112.1 NUDIX domain-containing protein -
  GV831_RS03675 (GV831_03645) folP 767421..768494 (-) 1074 WP_003132109.1 dihydropteroate synthase -
  GV831_RS03680 (GV831_03650) folE 768491..769540 (-) 1050 WP_014570583.1 GTP cyclohydrolase I FolE -
  GV831_RS03685 (GV831_03655) folB 769620..769970 (-) 351 WP_003132106.1 dihydroneopterin aldolase -
  GV831_RS03690 (GV831_03660) yihA 770024..770611 (-) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GV831_RS03695 (GV831_03665) clpX 770608..771843 (-) 1236 WP_014570582.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GV831_RS03700 (GV831_03675) - 772087..772593 (-) 507 WP_010905786.1 dihydrofolate reductase -
  GV831_RS03705 (GV831_03680) - 772992..773501 (+) 510 WP_010905785.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  GV831_RS03710 (GV831_03685) - 773621..774034 (+) 414 WP_003132097.1 hypothetical protein -
  GV831_RS03715 (GV831_03690) - 774063..775367 (-) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  GV831_RS03720 (GV831_03695) - 775416..776009 (-) 594 WP_003132093.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45994.86 Da        Isoelectric Point: 4.6053

>NTDB_id=366391 GV831_RS03695 WP_014570582.1 770608..771843(-) (clpX) [Lactococcus lactis subsp. lactis strain WHH2311]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=366391 GV831_RS03695 WP_014570582.1 770608..771843(-) (clpX) [Lactococcus lactis subsp. lactis strain WHH2311]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTGCAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ACGTTCCATTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GAACGGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TTCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.559

97.567

0.747
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564

Multiple sequence alignment