Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   FGE23_RS16780 Genome accession   NZ_CP040672
Coordinates   3418428..3419228 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain X030     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3413428..3424228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS16755 - 3413974..3414606 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  FGE23_RS19870 - 3414897..3415034 (+) 138 WP_014470646.1 hypothetical protein -
  FGE23_RS16760 - 3415128..3416246 (+) 1119 WP_003153184.1 NADH-dependent flavin oxidoreductase -
  FGE23_RS16765 - 3416373..3416585 (+) 213 WP_003153183.1 spore germination protein -
  FGE23_RS16770 - 3416712..3416924 (+) 213 WP_014305392.1 spore germination protein -
  FGE23_RS16775 alr 3417099..3418280 (+) 1182 WP_146277153.1 alanine racemase -
  FGE23_RS16780 spo0A 3418428..3419228 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  FGE23_RS16785 spoIVB 3419509..3420789 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  FGE23_RS16790 recN 3420953..3422683 (-) 1731 WP_146277155.1 DNA repair protein RecN Machinery gene
  FGE23_RS16795 ahrC 3422715..3423164 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  FGE23_RS16800 - 3423259..3424104 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=366381 FGE23_RS16780 WP_003153177.1 3418428..3419228(-) (spo0A) [Bacillus amyloliquefaciens strain X030]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=366381 FGE23_RS16780 WP_003153177.1 3418428..3419228(-) (spo0A) [Bacillus amyloliquefaciens strain X030]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAACGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTACCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment