Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FGE23_RS15720 Genome accession   NZ_CP040672
Coordinates   3172742..3173350 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3167742..3178350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS15680 - 3168795..3169301 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  FGE23_RS15685 - 3169440..3169853 (+) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  FGE23_RS15690 - 3169883..3170317 (-) 435 WP_070082016.1 YppG family protein -
  FGE23_RS15695 - 3170504..3170686 (+) 183 WP_003153532.1 YppF family protein -
  FGE23_RS15700 - 3170725..3171093 (-) 369 WP_070082017.1 YppE family protein -
  FGE23_RS15705 - 3171139..3171384 (-) 246 WP_039063257.1 DUF5446 family protein -
  FGE23_RS15710 sspM 3171590..3171694 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  FGE23_RS15715 - 3171738..3172700 (-) 963 WP_032861546.1 DUF2515 domain-containing protein -
  FGE23_RS15720 recU 3172742..3173350 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  FGE23_RS15725 - 3173389..3176172 (+) 2784 WP_146277068.1 PBP1A family penicillin-binding protein -
  FGE23_RS15730 - 3176250..3176741 (-) 492 WP_070082019.1 YpoC family protein -
  FGE23_RS15735 nth 3176738..3177397 (-) 660 WP_003153517.1 endonuclease III -
  FGE23_RS15740 dnaD 3177416..3178114 (-) 699 WP_070082021.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=366380 FGE23_RS15720 WP_003153521.1 3172742..3173350(+) (recU) [Bacillus amyloliquefaciens strain X030]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=366380 FGE23_RS15720 WP_003153521.1 3172742..3173350(+) (recU) [Bacillus amyloliquefaciens strain X030]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment