Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FGE23_RS12235 Genome accession   NZ_CP040672
Coordinates   2362579..2362863 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2357579..2367863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS12210 - 2358825..2359733 (+) 909 WP_146276681.1 ketopantoate reductase family protein -
  FGE23_RS12215 - 2359763..2360995 (-) 1233 WP_070081754.1 aminopeptidase -
  FGE23_RS12220 - 2361096..2361230 (-) 135 WP_003154559.1 protein YkpC -
  FGE23_RS12225 mreBH 2361302..2362309 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  FGE23_RS12235 abrB 2362579..2362863 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FGE23_RS12240 - 2363036..2364340 (+) 1305 WP_014304932.1 ATP-binding protein -
  FGE23_RS12245 - 2364342..2365169 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  FGE23_RS12250 ktrC 2365210..2365875 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  FGE23_RS12255 ade 2366024..2367757 (+) 1734 WP_146276683.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=366374 FGE23_RS12235 WP_024085249.1 2362579..2362863(+) (abrB) [Bacillus amyloliquefaciens strain X030]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=366374 FGE23_RS12235 WP_024085249.1 2362579..2362863(+) (abrB) [Bacillus amyloliquefaciens strain X030]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment