Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M594_RS07700 Genome accession   NZ_CP047883
Coordinates   1572970..1575192 (-) Length   740 a.a.
NCBI ID   WP_173876423.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567970..1580192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS07680 (M594_07705) - 1568086..1568787 (-) 702 WP_173876421.1 M57 family metalloprotease -
  M594_RS07685 (M594_07710) - 1568850..1569629 (-) 780 WP_173876422.1 alpha/beta hydrolase -
  M594_RS07690 (M594_07715) - 1569698..1571359 (-) 1662 WP_000065614.1 ribonuclease J -
  M594_RS07695 (M594_07720) - 1571574..1572922 (+) 1349 WP_173875850.1 IS3 family transposase -
  M594_RS07700 (M594_07725) recJ 1572970..1575192 (-) 2223 WP_173876423.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M594_RS07705 (M594_07730) - 1575369..1576127 (+) 759 WP_001229568.1 amino acid ABC transporter ATP-binding protein -
  M594_RS07710 (M594_07735) - 1576137..1576931 (+) 795 WP_084862996.1 transporter substrate-binding domain-containing protein -
  M594_RS07715 (M594_07740) - 1576944..1577621 (+) 678 WP_084862994.1 amino acid ABC transporter permease -
  M594_RS07720 (M594_07745) - 1577631..1578290 (+) 660 WP_173876424.1 amino acid ABC transporter permease -
  M594_RS07725 (M594_07750) - 1578434..1579624 (+) 1191 WP_173876425.1 ferric reductase-like transmembrane domain-containing protein -
  M594_RS07730 (M594_07755) - 1579737..1580174 (-) 438 WP_173876426.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 82556.11 Da        Isoelectric Point: 4.3542

>NTDB_id=366327 M594_RS07700 WP_173876423.1 1572970..1575192(-) (recJ) [Streptococcus mitis strain S022-V3-A4]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDQESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILVYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDANYPFKYLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVRGKGADAAGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFQVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVKLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGELPNLADSEAVIVKTVPEDITQLKTIFQEQNFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAAYLNIQQILLVKMIQVFEELSFVTIKDGVMKVNKEAPKREIGESQIYQNLKQIVKD
QEMMALGTVQEIYDFLMEKE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=366327 M594_RS07700 WP_173876423.1 1572970..1575192(-) (recJ) [Streptococcus mitis strain S022-V3-A4]
TTGATAACACCTACTTATGAATGGCAGTTTGCCCCGCAAGTAGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ATTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGAATTCAGGACCAAGAAAGTCTGAAGAAGTTTTTAGAGCCTT
CCTTAGAGGACTTGCATGACCCTTATCTGCTCCATGATATGGATAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAATATCCTCGTTTACGGTGATTATGATGCGGATGGTATGACTTCGGCTTCTATTGTTAAGGAAAGTTTGGAACA
GCTTGGTGCTGAGTGCCGTGTTTACTTGCCCAATCGTTTTACCGACGGTTATGGACCTAATGCCAGTGTTTACAAATATT
TTATCGAGCAAGAAGGAATTTCCTTGATTGTGACGGTGGATAACGGGGTTGCGGGTCACGAGGCTATTGAATTGGCCCAG
TCTATGGGAGTAGATGTCATTGTGACTGACCACCATTCTATGCCTGAAACCTTACCAGATGCCTATGCTATTGTCCATCC
TGAACATCCGGATGCGAACTATCCTTTCAAATATTTGGCTGGTTGTGGAGTTGCTTTCAAGCTGGCTTGTGCCCTTTTAG
AAGAAGTACAAGTGGAATTGCTTGATTTGGTCGCTATTGGTACCATTGCTGATATGGTGAGTTTGACGGATGAAAACCGT
ATCTTGGTTCAGTATGGTCTGGAGATGTTGGGACATACCCAGCGCATTGGTCTGCAAGAAATGCTGGACATGGCTGGGAT
TGCTGCCAACGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTGAATGCCTTGGGCCGTTTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGCTTTGATGATGAGGAAGCACATGAGATTGCTCTCATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTCCAGTCTATCTATGAAGAAGCTAAGACCATGGTGGACCCTGAGAAGAAGGTCCAAGTCTT
GGCTAAGGAAGGCTGGAATCCTGGAGTTCTGGGTATCGTTGCTGGTCGTTTGTTGGAAGAACTAGGACAGACAGTCATCG
TTCTTAATATAGAAGACGGTCGTGCCAAGGGTAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCTTAGATCCT
CATCGTGACCTCTTTATAGCCTTTGGTGGCCATGCTGGCGCAGCAGGAATGACGCTGGAAGTTGAAAAACTTTCAGATTT
ATCTCAAGTCTTGGAAGATTATGTTCGTGGAAAAGGCGCAGATGCTGCTGGCAAGAACAAGTTAAATCTAGATGAAGAAC
TGGATTTGGAGACACTTAGCTTGGAAACGGTCAAAAGTTTTGAACGTTTGGCACCCTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATTAAGGATTTTCAGGTCGAAAGTGCCCGGACTATGGGAGCAGGCAACGCCCATCTCAAGCTGAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTAGCATTTGGACAAGGTAGATGGGCAACAGAATTTGCTCAAACCAAGAATCTAG
AGCTGGCAGTTAAATTGTCTGTCAACCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGTGTTCAACTCTTTAACATTCGTGGGAAAAATGCAGTCTTGCCAGAGGGAGTTCCAGTCTTGGATTTTGCTGGAGAACT
GCCAAATCTGGCGGATAGTGAAGCTGTTATCGTAAAAACCGTTCCTGAGGATATTACTCAGCTGAAGACCATTTTTCAGG
AACAGAATTTCTCTGCGGTCTATTTCAAAAATGATATTGACAAGGCCTACTATCTAACAGGTTATGGGACTAGAGAGCAG
TTTGCCAAATTGTACAAGACCATCTACCAGTTTCCAGAGTTTGATATTCGCTACAAGCTGAAAGACTTGGCTGCTTATCT
CAATATTCAACAAATCTTGCTGGTCAAGATGATTCAAGTGTTTGAAGAACTAAGCTTTGTGACGATCAAAGATGGTGTTA
TGAAGGTGAATAAAGAGGCACCGAAACGTGAAATCGGAGAAAGTCAGATTTACCAAAATCTCAAGCAAATCGTTAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATTTATGACTTTTTGATGGAAAAAGAATAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-734)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

97.162

100

0.972
  recJ Bacillus subtilis subsp. subtilis str. 168

36.528

100

0.381

Multiple sequence alignment