Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FGE23_RS00285 Genome accession   NZ_CP040672
Coordinates   53681..54325 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain X030     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 48681..59325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS00250 - 49866..50297 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  FGE23_RS00255 - 50297..50638 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  FGE23_RS00260 - 50631..52112 (+) 1482 WP_146275403.1 Na+/H+ antiporter subunit D -
  FGE23_RS00265 - 52118..52594 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  FGE23_RS00270 - 52594..52878 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  FGE23_RS00275 mnhG 52862..53236 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  FGE23_RS00280 - 53276..53659 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  FGE23_RS00285 comA 53681..54325 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  FGE23_RS00290 comP 54406..56712 (-) 2307 WP_146275405.1 sensor histidine kinase Regulator
  FGE23_RS00295 comX 56731..56907 (-) 177 WP_044052947.1 competence pheromone ComX -
  FGE23_RS00300 - 56922..57797 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  FGE23_RS00305 degQ 57949..58089 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  FGE23_RS00315 - 58554..58895 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=366327 FGE23_RS00285 WP_003152052.1 53681..54325(-) (comA) [Bacillus amyloliquefaciens strain X030]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=366327 FGE23_RS00285 WP_003152052.1 53681..54325(-) (comA) [Bacillus amyloliquefaciens strain X030]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGCTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment