Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFX45_RS11725 Genome accession   NZ_CP040671
Coordinates   2386133..2387524 (-) Length   463 a.a.
NCBI ID   WP_149821088.1    Uniprot ID   -
Organism   Thermosynechococcus sp. CL-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381133..2392524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFX45_RS11695 (FFX45_11695) - 2381626..2382030 (+) 405 WP_149821076.1 DUF3119 family protein -
  FFX45_RS11700 (FFX45_11700) - 2382020..2382988 (+) 969 WP_149821078.1 DUF3086 domain-containing protein -
  FFX45_RS11705 (FFX45_11705) plsY 2382999..2383634 (+) 636 WP_149821080.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  FFX45_RS11710 (FFX45_11710) argF 2383776..2384690 (+) 915 WP_190278092.1 ornithine carbamoyltransferase -
  FFX45_RS11715 (FFX45_11715) - 2384695..2385546 (+) 852 WP_190278093.1 ABC transporter permease -
  FFX45_RS11720 (FFX45_11720) cobU 2385563..2386129 (+) 567 WP_149821086.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FFX45_RS11725 (FFX45_11725) radA 2386133..2387524 (-) 1392 WP_149821088.1 DNA repair protein RadA Machinery gene
  FFX45_RS11730 (FFX45_11730) - 2387543..2388031 (-) 489 WP_149821090.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FFX45_RS11735 (FFX45_11735) - 2388025..2388345 (-) 321 WP_149821092.1 phasin family protein -
  FFX45_RS11740 (FFX45_11740) secG 2388455..2388688 (+) 234 WP_149821094.1 preprotein translocase subunit SecG -
  FFX45_RS11745 (FFX45_11745) - 2388700..2389197 (+) 498 WP_149821096.1 GNAT family N-acetyltransferase -
  FFX45_RS11750 (FFX45_11750) - 2389163..2390575 (-) 1413 WP_149821099.1 serine/threonine-protein kinase -
  FFX45_RS11755 (FFX45_11755) - 2390604..2391254 (-) 651 WP_149821101.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49584.17 Da        Isoelectric Point: 7.0687

>NTDB_id=366323 FFX45_RS11725 WP_149821088.1 2386133..2387524(-) (radA) [Thermosynechococcus sp. CL-1]
MPKAKVLYICRECGAESLQYFGRCPNCGQWNTLDEQVVTPVETAARRTTSRKSTAPHPLSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLWQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAAPPSLYLLAETDLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVQPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPESQACAIAGLEIYPVHRVTDAIVAALAAMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=366323 FFX45_RS11725 WP_149821088.1 2386133..2387524(-) (radA) [Thermosynechococcus sp. CL-1]
ATGCCCAAGGCCAAGGTACTGTATATCTGCCGCGAGTGTGGTGCCGAGTCTCTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTACCCCTGTAGAGACCGCTGCTCGACGCACAACCTCCCGAAAATCGA
CCGCTCCCCACCCCCTCAGCGCCAAGGCCTTAGGAGAGATTAGCGAACAGACCCAGAGCCGTTCTGCCTCTGGATTTGCT
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTGGCAGATGGCAGCCACCTTGGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCAGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGCTTGGGCATTGCTGCCCCCCCTTCCCTTTATCTCTTGGCCGAGACGGATTTAGAGGTC
ATCCTGCAGGAACTTACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAACTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTCCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAAATGAGTT
TATTTATTGTGGGGCATGTCACAAAGGAAGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGTGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCCGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTGGTCAGCCCCACCAGT
TATCCCTCTCCGCGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAGCGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTACGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTCG
GGGTGGCGGTGGCTGTTGTGGCCAGTTTTCGCGATCGCTGGGTACAACCCCAAACCGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAGCCAAGCCTGTGCGATCGCGGGGCTAGAAATTTATCCTGTACATCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCGCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.817

100

0.49
  radA Streptococcus mitis NCTC 12261

48.853

94.168

0.46
  radA Streptococcus pneumoniae Rx1

48.853

94.168

0.46
  radA Streptococcus pneumoniae D39

48.853

94.168

0.46
  radA Streptococcus pneumoniae R6

48.853

94.168

0.46
  radA Streptococcus pneumoniae TIGR4

48.853

94.168

0.46
  radA Streptococcus mitis SK321

48.853

94.168

0.46

Multiple sequence alignment