Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   M594_RS05655 Genome accession   NZ_CP047883
Coordinates   1135373..1136443 (+) Length   356 a.a.
NCBI ID   WP_150923141.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1130373..1141443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS05630 (M594_05645) ylqF 1130598..1131449 (+) 852 WP_173876195.1 ribosome biogenesis GTPase YlqF -
  M594_RS05635 (M594_05650) - 1131436..1132215 (+) 780 WP_173876196.1 ribonuclease HII -
  M594_RS05640 (M594_05655) - 1132232..1133782 (+) 1551 WP_173876746.1 ClC family H(+)/Cl(-) exchange transporter -
  M594_RS10205 (M594_05660) - 1134162..1134287 (+) 126 WP_368039302.1 hypothetical protein -
  M594_RS05650 (M594_05665) - 1134550..1134972 (+) 423 WP_173876197.1 hypothetical protein -
  M594_RS05655 (M594_05670) xerS 1135373..1136443 (+) 1071 WP_150923141.1 tyrosine recombinase XerS Machinery gene
  M594_RS05660 (M594_05675) - 1136518..1137507 (-) 990 WP_173876198.1 lipoate--protein ligase -
  M594_RS05665 (M594_05680) lpdA 1137567..1139270 (-) 1704 WP_173876199.1 dihydrolipoyl dehydrogenase -
  M594_RS05670 (M594_05685) - 1139316..1140359 (-) 1044 WP_173876200.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41232.29 Da        Isoelectric Point: 9.5850

>NTDB_id=366305 M594_RS05655 WP_150923141.1 1135373..1136443(+) (xerS) [Streptococcus mitis strain S022-V3-A4]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLSYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVYLDIRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=366305 M594_RS05655 WP_150923141.1 1135373..1136443(+) (xerS) [Streptococcus mitis strain S022-V3-A4]
ATGAAACGTGAGATTTTACTAGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTCCCCTATAGTTTTACAACCTTGTACGAATACCTCAAGGAATACGATCGATTTTTTAGCTGGGTTTTGG
AGTCTGGCATTTCAAACGCTGATAAAATATCTGATATTCCTTTATCGGTATTGGAAAATATGTCAAAGAAAGATATGGAA
TCTTTTATCCTTTATCTTCGTGAACGTCCTTTGCTGAATGCTAATACAACCAAGCAAGGAGTTTCTCAGACAACCATCAA
TCGGACCTTGTCAGCACTTTCTAGTCTTTACAAGTATCTGACCGAGGAGGTTGAAAACGATCAAGGGGAACCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACAAAGAAAAAGAAAGAGACACTTGCTGCTAGAGCTGAAAACATCAAGCAAAAA
CTCTTTTTAGGTGATGAAACAGAAGGTTTTCTATCTTATATTGACCAAGAGTATCCACAACAACTTTCAAATCGCGCTCT
CTCATCATTCAACAAAAATAAAGAACGTGATTTGGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTTATCTGGATATAAGGGATCTCAATCTCAAAATGATGGTTATCGATGTCACTCGAAAAGGGGGCAAACGTGACTCT
GTCAATGTCGCTGCCTTTGCTAAGCCTTATTTAGAGAATTATCTGGCCATTCGAAATCAACGCTATAAGACGGAAAAAAC
AGATACAGCCCTTTTTTTGACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAAAAAATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTGCGTGTAACCCCCCACAAACTACGACATACTCTAGCAACTAGGCTCTATGATGCCACT
AAATCTCAAGTTTTGGTCAGTCACCAGTTAGGACATGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986