Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M594_RS04145 Genome accession   NZ_CP047883
Coordinates   836582..838249 (+) Length   555 a.a.
NCBI ID   WP_173876051.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831582..843249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS04115 (M594_04140) udk 832175..832813 (+) 639 WP_001181376.1 uridine kinase -
  M594_RS04120 (M594_04145) xseA 832941..834281 (+) 1341 WP_173876047.1 exodeoxyribonuclease VII large subunit -
  M594_RS04125 (M594_04150) - 834259..834471 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  M594_RS04130 (M594_04155) - 834468..835343 (+) 876 WP_173876048.1 polyprenyl synthetase family protein -
  M594_RS04135 (M594_04160) - 835336..836151 (+) 816 WP_173876049.1 TlyA family RNA methyltransferase -
  M594_RS04140 (M594_04165) - 836144..836575 (+) 432 WP_173876050.1 arginine repressor -
  M594_RS04145 (M594_04170) recN 836582..838249 (+) 1668 WP_173876051.1 DNA repair protein RecN Machinery gene
  M594_RS04150 (M594_04175) - 838251..838979 (+) 729 WP_173876052.1 metallophosphoesterase family protein -
  M594_RS04155 (M594_04180) lepA 839058..840881 (+) 1824 WP_001047207.1 translation elongation factor 4 -
  M594_RS04160 (M594_04185) dprA/cilB/dalA 841020..841868 (+) 849 WP_173876053.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62847.31 Da        Isoelectric Point: 4.6040

>NTDB_id=366297 M594_RS04145 WP_173876051.1 836582..838249(+) (recN) [Streptococcus mitis strain S022-V3-A4]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLEMGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTAFWALKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLSLNQEREKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQIENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQALAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNEHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=366297 M594_RS04145 WP_173876051.1 836582..838249(+) (recN) [Streptococcus mitis strain S022-V3-A4]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCTACGACAGATG
TTATTCGTCACGGTGCGCCAAAGGCAGAGATTGAGGGTCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTGGAAATGGGAGATGAAATCATCATCCGTCGAGAAATTCTGCAAAATGGTCGTAGTATTAGTCGTGT
CAATGGCCAAATGGTCAATCTGTCTGTTTTGCGTGCTATTGGGCAACATCTTGTAGATATACATGGTCAGCATGACCAAG
AAGAGTTAATGCGCCCTCAACTTCATATTCAAATGTTGGATGAATTTGGTGATACAGCCTTTTGGGCCTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGTAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
TCGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAAGCTGGTGAAGACTTATCTCTCAATC
AAGAGCGAGAGAAACTTCTCAACCATAAAAACATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCTAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTTGAAGAGTACGACCCTGAATACCGTGAAAT
TTCAAGCTCTTTGTCTGAGACATACTATGTCTTAGAAGACATTAGCAAACGTTTGGAAGCAATCATTGAGGACCTTGATT
TTGATGGTAATCGTCTCATGCAGATCGAGAATCGTTTGGATCTCCTTCATACTATTACCCGTAAGTACGGTGGGACTGTT
GATGATGTCTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGAAATAACCTTTCGTCTGAGGACAT
GGAAGCAGAGCTCAAGAAATTGGAAGTTAATCTTGTCGACTTGGCAGGTCAGCTTGCATCTGCTCGTCATGATTTGGCTC
AGCAGCTTGAAGCTGAGATTAAACAAGAACTGCAAGACCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGCAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTACATTTCAACCAACCCTGGCGAAGACTTTAAACCTTTGGT
CAAGGTTGCTTCTGGTGGGGAATTATCCCGTCTCATGCTAGCTATTAAATCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGCCGTGTAGCTCAGGCCCTTGCACAGAAGATTCACAAGATTGGC
CAACATGGTCAGGTTCTGGCTATTTCCCATTTGCCACAAGTGATTGCGATTGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCAATGAGCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTTGAAGAGCGAGTGGAAGAAGTTGCTAAGATGTTGG
CAGGTGATGATGTGACGGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.606

100

0.436