Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M594_RS00165 Genome accession   NZ_CP047883
Coordinates   30874..31644 (+) Length   256 a.a.
NCBI ID   WP_173875638.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25874..36644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS00140 (M594_00140) - 26034..26849 (+) 816 WP_173875634.1 PrsW family intramembrane metalloprotease -
  M594_RS00145 (M594_00145) - 26994..27962 (+) 969 WP_000010168.1 ribose-phosphate diphosphokinase -
  M594_RS00150 (M594_00150) - 28080..28517 (+) 438 WP_173875635.1 CoA-binding protein -
  M594_RS00155 (M594_00155) - 28549..29559 (-) 1011 WP_173875636.1 YeiH family protein -
  M594_RS00160 (M594_00160) - 29708..30877 (+) 1170 WP_173875637.1 pyridoxal phosphate-dependent aminotransferase -
  M594_RS00165 (M594_00165) recO 30874..31644 (+) 771 WP_173875638.1 DNA repair protein RecO Machinery gene
  M594_RS00170 (M594_00170) plsX 31641..32633 (+) 993 WP_173875639.1 phosphate acyltransferase PlsX -
  M594_RS00175 (M594_00175) - 32639..32875 (+) 237 WP_000136444.1 acyl carrier protein -
  M594_RS00180 (M594_00180) - 33320..33496 (+) 177 WP_000180828.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  M594_RS00185 (M594_00185) - 33728..33898 (+) 171 WP_173875640.1 H354_08695 family bacteriocin-like peptide -
  M594_RS00190 (M594_00190) - 33938..34117 (+) 180 WP_000846988.1 hypothetical protein -
  M594_RS10055 - 34525..34713 (+) 189 WP_254597155.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29918.39 Da        Isoelectric Point: 5.1808

>NTDB_id=366254 M594_RS00165 WP_173875638.1 30874..31644(+) (recO) [Streptococcus mitis strain S022-V3-A4]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEEGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPDHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=366254 M594_RS00165 WP_173875638.1 30874..31644(+) (recO) [Streptococcus mitis strain S022-V3-A4]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTGGTCAAAATTTT
TACCGAGCAGGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCACGGTTTCTCTTACGAATCAATGATGACGGCCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCGACTTATGTTGCGGCTCTGGCCGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTATTTGCCTTCTTGAGAAAGACTCTAGAGTTGATGGAAGAGGGTTTAGATTATCAAGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCCGATTTGGTATTAGTCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGATTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGATCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGTTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.266

100

0.973